https://dockstore.org/containers/ghcr.io/unity-sds/unity-data-services/mdps-stage-in https://dockstore.org/containers/github.com/ImagingDataCommons/Cloud-Resources-Workflows/TotalSegmentatorOneVmWorkflowOnSB-CGC https://dockstore.org/containers/github.com/LinkunGao/test-dock-hw https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/BWA-Index https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/BWA-Mem https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-ApplyBQSR https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-BaseRecalibrator https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-CNNScoreVariants https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-FilterMutectCalls https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-FilterVariantTranches https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-FixMateInformation https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-HaplotypeCaller https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-MarkDuplicates https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-SelectVariants https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-SplitNCigarReads https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/GATK-VariantFiltration https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/Gunzip https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/Kallisto-Index https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/Kallisto-Quant https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/Lancet https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/MashMap https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/Pizzly https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/STAR-Align https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/STAR-Index https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/awk https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bamtools_stats https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bandage-image https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bandage-info https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedgraph_sort https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_bamtobed_1 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_bamtobed_2 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_bedtobam https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_genomecov https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_genomecov_bed2bedgraph https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_getfasta https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_intersect https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_merge https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bedtools_slop_clip_to_chrom_boundaries https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bismark_align https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bismark_extract_methylation https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bismark_prepare_genome https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bismark_report https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bowtie2 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bowtie2_align https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bowtie2_build https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bowtie_align https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bowtie_build https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/bzip2_compress https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/component_segmentation https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/crossmap https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/custom_bash https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/cutadapt-paired https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/deeptools_alignmentsieve https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/deeptools_bamCoverage https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/deeptools_plotCoverage https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/deeptools_plotFingerprint https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/deseq_advanced https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/extract_fastq https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/fastp https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/fastq_dump https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/fastqc_1 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/fastqc_2 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/fastx_quality_stats https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/featureCounts https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/grep https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/halliftover https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/homer-annotate-peaks-hist https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/homer-make-metagene-profile https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/homer-make-tag-directory https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/hopach https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/ivar_trim https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/kraken2 https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/lofreq_call https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/lofreq_viterbi https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/mafft https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/manorm https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/minimap2_paf https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/minimap2_sam https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/multiqc https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/nanoplot https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/nextclade https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/nucleoatac https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/odgi_bin https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/odgi_build https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/odgi_pathindex https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/odgi_sort https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/odgi_viz https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/pca https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/phantompeakqualtools https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/picard_AddOrReplaceReadGroups https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/picard_CreateSequenceDictionary https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/picard_MarkDuplicates https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/picard_SortSam https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/prefetch https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/preseq_lc_extrap https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/qualimap_rnaseq https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/rename https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_faidx https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_fastq https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_index https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_merge https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_sort https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_stats https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_view_count_alignments https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_view_filter https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/samtools_view_sam2bam https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/seqkit_rmdup https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/spades https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/trim_galore https://dockstore.org/containers/github.com/common-workflow-library/bio-cwl-tools/unicycler https://dockstore.org/containers/github.com/david4096/croissant-rdf/huggingface-rdf https://dockstore.org/containers/github.com/david4096/llama-cli-cwl/llama-cli-summarize https://dockstore.org/containers/github.com/david4096/umap-jsonl/umap-jsonl https://dockstore.org/containers/github.com/dockstore/dockstore-tool-bamstats/bamstats_cwl https://dockstore.org/containers/github.com/dockstore/dockstore-tool-bamstats/bamstats_sort_cwl https://dockstore.org/containers/github.com/ellisdoro/BioHackathonFiles2024/togovar_annotator https://dockstore.org/containers/github.com/laitanawe/ismb2024/cwl_example https://dockstore.org/containers/github.com/mr-c/dockstore-tool-md5sum https://dockstore.org/containers/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorOneVmWorkflowOnSB-CGC-Test2 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/BWA-Index https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/BWA-Mem https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-ApplyBQSR https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-BaseRecalibrator https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-CNNScoreVariants https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-FilterMutectCalls https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-FilterVariantTranches https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-FixMateInformation https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-HaplotypeCaller https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-MarkDuplicates https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-SelectVariants https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-SplitNCigarReads https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/GATK-VariantFiltration https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/Gunzip https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/Kallisto-Index https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/Kallisto-Quant https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/Lancet https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/MashMap https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/Pizzly https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/STAR-Align https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/STAR-Index https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/awk https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bamtools_stats https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bandage-image https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bandage-info https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedgraph_sort https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_bamtobed_1 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_bamtobed_2 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_bedtobam https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_genomecov https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_genomecov_bed2bedgraph https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_getfasta https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_intersect https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_merge https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bedtools_slop_clip_to_chrom_boundaries https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bismark_align https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bismark_extract_methylation https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bismark_prepare_genome https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bismark_report https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bowtie2 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bowtie2_align https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bowtie2_build https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bowtie_align https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bowtie_build https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/bzip2_compress https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/component_segmentation https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/crossmap https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/custom_bash https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/cutadapt-paired https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/deeptools_alignmentsieve https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/deeptools_bamCoverage https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/deeptools_plotCoverage https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/deeptools_plotFingerprint https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/deseq_advanced https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/extract_fastq https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/fastp https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/fastq_dump https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/fastqc_1 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/fastqc_2 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/fastx_quality_stats https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/featureCounts https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/grep https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/halliftover https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/homer-annotate-peaks-hist https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/homer-make-metagene-profile https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/homer-make-tag-directory https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/hopach https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/ivar_trim https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/kraken2 https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/lofreq_call https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/lofreq_viterbi https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/mafft https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/manorm https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/minimap2_paf https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/minimap2_sam https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/multiqc https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/nanoplot https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/nextclade https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/nucleoatac https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/odgi_bin https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/odgi_build https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/odgi_pathindex https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/odgi_sort https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/odgi_viz https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/pca https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/phantompeakqualtools https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/picard_AddOrReplaceReadGroups https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/picard_CreateSequenceDictionary https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/picard_MarkDuplicates https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/picard_SortSam https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/prefetch https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/preseq_lc_extrap https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/qualimap_rnaseq https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/rename https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_faidx https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_fastq https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_index https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_merge https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_sort https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_stats https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_view_count_alignments https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_view_filter https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/samtools_view_sam2bam https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/seqkit_rmdup https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/spades https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/trim_galore https://dockstore.org/containers/github.com/workflow-development-interest-group/bio-cwl-tools/unicycler https://dockstore.org/containers/images.sbgenomics.com/nikola_tesic/quagmir https://dockstore.org/containers/quay.io/almussel/pubmunch-docker https://dockstore.org/containers/quay.io/anmoljh/docker-delly https://dockstore.org/containers/quay.io/arhodes_cgrb_osu/dockstore-training-fastqc-ar https://dockstore.org/containers/quay.io/briandoconnor/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/briandoconnor/dockstore-tool-bamstats-class https://dockstore.org/containers/quay.io/briandoconnor/dockstore-tool-md5sum https://dockstore.org/containers/quay.io/briandoconnor/dockstore-workflow-md5sum-tester https://dockstore.org/containers/quay.io/briandoconnor/fastqc https://dockstore.org/containers/quay.io/brunograndephd/dockstore-intro https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-liftover https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-rnaseqc https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-samtools-index https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-samtools-rmdup https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-samtools-sort https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-samtools-view https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-snpeff https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-ubu-sam-diff https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-ubu-sam-filter https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-ubu-sam-summary https://dockstore.org/containers/quay.io/cblatti3/kn_fetcher https://dockstore.org/containers/quay.io/cblatti3/kn_mapper https://dockstore.org/containers/quay.io/chienchi/dockstore-edge-covid19 https://dockstore.org/containers/quay.io/chienchi/dockstore-edge-covid19/edge-covid19-sra https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bamstats/bam-stats https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bedtools-genomecov https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-aln https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-mem https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-samse https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-kallisto https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-linux-sort https://dockstore.org/containers/quay.io/ctb/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/denis_yuen/dockstore-test3 https://dockstore.org/containers/quay.io/dockstore-testing/test_repo https://dockstore.org/containers/quay.io/dockstore/phylowgs https://dockstore.org/containers/quay.io/dvoet/dockerstor_tutorial https://dockstore.org/containers/quay.io/eiffl/txpipe/TXDiagnosticMaps https://dockstore.org/containers/quay.io/eiffl/txpipe/TXRandomPhotozPDF https://dockstore.org/containers/quay.io/encode-dcc/filter https://dockstore.org/containers/quay.io/encode-dcc/mapping https://dockstore.org/containers/quay.io/encode-dcc/post_mapping https://dockstore.org/containers/quay.io/encode-dcc/validator https://dockstore.org/containers/quay.io/encode-dcc/xcor https://dockstore.org/containers/quay.io/eugenradu/testing https://dockstore.org/containers/quay.io/f73chen/dockstore-test3 https://dockstore.org/containers/quay.io/f73chen/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/f73chen/new_account_bamstats/quay_new_account_bamstats https://dockstore.org/containers/quay.io/florentiner/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/florentiner/dockstore-tool-bamstats_2 https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-helloworld https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-helloworld-checker https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-synapse-get https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-synapse-submit https://dockstore.org/containers/quay.io/gabdank/post_mapping https://dockstore.org/containers/quay.io/ibrahimjabarkhel/toolkit-for-generating-test-data/Generating-Test-Data https://dockstore.org/containers/quay.io/icgc-argo/bwa-mem-aligner https://dockstore.org/containers/quay.io/ilya_broad/docker-tool-cosi2 https://dockstore.org/containers/quay.io/ivazquez/clonehd-pcawg https://dockstore.org/containers/quay.io/jeremiahsavage/awscli https://dockstore.org/containers/quay.io/jhrf/telomerecat https://dockstore.org/containers/quay.io/jlanej/mosdepth-docker https://dockstore.org/containers/quay.io/jmonlong/dockstore-ktag https://dockstore.org/containers/quay.io/jwerner_dkfz/DKFZBiasFilter https://dockstore.org/containers/quay.io/jwerner_dkfz/pancanqc https://dockstore.org/containers/quay.io/k-cao/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/keiranmraine/dockstore-dd https://dockstore.org/containers/quay.io/ljdursi/pcawg-merge-annotate https://dockstore.org/containers/quay.io/luizirber/sourmash-cwl https://dockstore.org/containers/quay.io/mdaya/filter_rsq/filterrsq https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/create_mr_mega_input https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/run_metal https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/run_mr_mega https://dockstore.org/containers/quay.io/mdaya/topmed_imputation https://dockstore.org/containers/quay.io/mduran/generate-igv-session_2/GenerateIGVSession https://dockstore.org/containers/quay.io/mr_c/khmer https://dockstore.org/containers/quay.io/nceglia/cellassign-tool https://dockstore.org/containers/quay.io/nceglia/clonealign-tool https://dockstore.org/containers/quay.io/nceglia/scvis-tool https://dockstore.org/containers/quay.io/pancancer/pcawg-bwa-mem-workflow https://dockstore.org/containers/quay.io/pancancer/pcawg-consensus-caller https://dockstore.org/containers/quay.io/pancancer/pcawg-dkfz-workflow https://dockstore.org/containers/quay.io/pancancer/pcawg-muse https://dockstore.org/containers/quay.io/pancancer/pcawg-oxog-filter https://dockstore.org/containers/quay.io/pancancer/pcawg-sanger-cgp-workflow https://dockstore.org/containers/quay.io/pancancer/pcawg_delly_workflow https://dockstore.org/containers/quay.io/pancancer/variantbam https://dockstore.org/containers/quay.io/pooja043/genomics_docker/BWA_MEM https://dockstore.org/containers/quay.io/pvanheus/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/pvanheus/repeatmasker https://dockstore.org/containers/quay.io/ratschlab/workflow-experiment https://dockstore.org/containers/quay.io/redaq/bcf-convert-vcf https://dockstore.org/containers/quay.io/richardhansen/hello_world_testing https://dockstore.org/containers/quay.io/sagebionetworks/dockstore-tool-mageck https://dockstore.org/containers/quay.io/shanrongzhao/bamstats https://dockstore.org/containers/quay.io/standage/megahit-dockstore https://dockstore.org/containers/quay.io/standage/tag-dockstore-test https://dockstore.org/containers/quay.io/superjw/dockstore-tool-bamstats https://dockstore.org/containers/quay.io/testaccountq/test6 https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore-tool-gene-by-cell-creator https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore-tool-runner https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_adtex https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_arriba https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_varscan_cnv https://dockstore.org/containers/quay.io/ucsc_cgl/protect https://dockstore.org/containers/quay.io/ucsc_cgl/rnaseq-cgl-pipeline https://dockstore.org/containers/quay.io/ucsc_cgl/simple_python https://dockstore.org/containers/quay.io/wshands/bare_bcbio/bare_bcbio_germline_variant_calling https://dockstore.org/containers/quay.io/wshands/bare_bcbio/bare_bcbio_somatic_variant_calling https://dockstore.org/containers/quay.io/wshands/fastqc https://dockstore.org/containers/quay.io/wshands/walts_python https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bam2bedgraph https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bam2bw https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bam2bwbases https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bg2bw https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bwcat https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bwjoin https://dockstore.org/containers/quay.io/wtsicgp/dockstore-biobambam2/bamtofastq https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-chksum https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-irap https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-irap/cgp_irap https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-seqval https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bedgraph https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bw https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bwbases https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bg2bw https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bwcat https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bwjoin https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-bamCsiOut https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-bamOut https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-cramOut https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpwgs https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpwxs https://dockstore.org/containers/quay.io/wtsicgp/dockstore-ppcg-gridss/GRIDSS-ppcg-wrapper https://dockstore.org/containers/quay.io/wtsicgp/dockstore-pycrisprcleanr https://dockstore.org/containers/quay.io/wtsicgp/gatk_eze/bam_to_gvcf_haplotypcaller https://dockstore.org/containers/quay.io/wtsicgp/ppcg-qc-from-sanger https://dockstore.org/containers/quay.io/zek12/dockerized_gatk_pipeline https://dockstore.org/containers/quay.io/zek12/dockstore-tool-bamstats https://dockstore.org/containers/registry.hub.docker.com/ajsenf/orgaquant https://dockstore.org/containers/registry.hub.docker.com/broadinstitute/pcawg_broad_wgs_variant_callers/pcawg-broad-wgs-variant-caller https://dockstore.org/containers/registry.hub.docker.com/cancercollaboratory/dockstore-tool-bamstats https://dockstore.org/containers/registry.hub.docker.com/dailyk/dockstore-tool-bwa-mem/bwa-mem https://dockstore.org/containers/registry.hub.docker.com/dailyk/ghtf-r35-jpy-singlecell https://dockstore.org/containers/registry.hub.docker.com/g3chen/new_account_bamstats https://dockstore.org/containers/registry.hub.docker.com/g3chen/output-test https://dockstore.org/containers/registry.hub.docker.com/ga4gh/refget-compliance-suite https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/bundle https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/bundle_min https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/find https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/preprocessing https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/ref https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/ref_min https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/simulate https://dockstore.org/containers/registry.hub.docker.com/jamesrcounts/variantspark/variant-spark https://dockstore.org/containers/registry.hub.docker.com/karchinlab/opencravat https://dockstore.org/containers/registry.hub.docker.com/karchinlab/opencravat-cwl-install/opencravat-install https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn-jupyter-docker https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn/blastn https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn/blastn-test https://dockstore.org/containers/registry.hub.docker.com/manninglab/singlevariantassociation/summaryCSV https://dockstore.org/containers/registry.hub.docker.com/mazumderlab/biomuta_docker_image/biomuta https://dockstore.org/containers/registry.hub.docker.com/mruffalo/star-grch38/star-2_6_1e https://dockstore.org/containers/registry.hub.docker.com/nathankw/dockstore-tool-bamstats https://dockstore.org/containers/registry.hub.docker.com/nlppln/nlppln-align https://dockstore.org/containers/registry.hub.docker.com/opengenomics/fpfilter https://dockstore.org/containers/registry.hub.docker.com/opengenomics/muse https://dockstore.org/containers/registry.hub.docker.com/opengenomics/mutect https://dockstore.org/containers/registry.hub.docker.com/opengenomics/pindel https://dockstore.org/containers/registry.hub.docker.com/opengenomics/radia https://dockstore.org/containers/registry.hub.docker.com/opengenomics/radia/radia_filter https://dockstore.org/containers/registry.hub.docker.com/opengenomics/samtools-pileup https://dockstore.org/containers/registry.hub.docker.com/opengenomics/somatic-sniper/somaticsniper https://dockstore.org/containers/registry.hub.docker.com/opengenomics/varscan/varscan_somatic https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bai/bai https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bamsubsample/bamsubsample https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bcftovcf/bcftovcf https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bwa_mem_bamsormadup/bwa_mem_bamsormadup https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_call_cnvs/clamms_call_cnvs https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_compute_windows/clamms_compute_windows https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_fit_models/clamms_fit_models https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_normalize_coverage/clamms_normalize_coverage https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clinvar_parser/clinvar_parser https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/codondex-iscore/codondex-iscore https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/cutadapt/cutadapt https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/dbnsfp_parser/dbnsfp_parser https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demobharris/demobharris https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demodfraser/demodfraser https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demokking/demokking https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demopstjean/demopstjean https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demosj/demosj https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/elprep/elprep https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/exac_parser-openbiosd/exac_parser-openbiosd https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/exac_parser/exac_parser https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fastqc_demo/fastqc_demo https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/faststructure/faststructure https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fermikit/fermikit https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fermikit_nctr/fermikit_nctr https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/freebayes/freebayes https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/ga4gh-report-comparison/ga4gh-report-comparison https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/ga4gh-streaming-freebayes/ga4gh-streaming-freebayes https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5/gatk-haplotypecaller-hs37d5 https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5decoy/gatk-haplotypecaller-hs37d5decoy https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller/gatk-haplotypecaller https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-hs37d5decoy-hardfilter/gatk-hs37d5decoy-hardfilter https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-validatevariants/gatk-validatevariants https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk4-haplotypecallerspark-hs37d5/gatk4-haplotypecallerspark-hs37d5 https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/goi-diversity/goi-diversity https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/hive-insilico/hive-insilico https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/illumina-happy-comparison-customstratify/illumina-happy-comparison-customstratify https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/illumina-happy-comparison/illumina-happy-comparison https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/key_gene_coverage/key_gene_coverage https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/methylextract/methylextract https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/picard-markduplicates/picard-markduplicates https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/picard-meanqualitybycycle/picard-meanqualitybycycle https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/platypus-2/platypus-2 https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/platypus/platypus https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/primus/primus https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/protein_pattern_hash/protein_pattern_hash https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/rna2dnalign/rna2dnalign https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/rtg-core-variant-caller/rtg-core-variant-caller https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/scalpel-discovery-single/scalpel-discovery-single https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/snpeff/snpeff https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/snpsift-filter/snpsift-filter https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/soapdenovo-demo/soapdenovo-demo https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/testapp/testapp https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/url-fetcher/url-fetcher https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varscan/varscan https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-art-clinvar-simulation/varsim-art-clinvar-simulation https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-art-simulation/varsim-art-simulation https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-vcfcompare/varsim-vcfcompare https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcf-comparison/vcf-comparison https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcfeval-happy-comparison-vcfcheck/vcfeval-happy-comparison-vcfcheck https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcfeval-happy-comparison/vcfeval-happy-comparison https://dockstore.org/containers/registry.hub.docker.com/postgres/postgres/private_demo https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-create https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get-annotations https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get-sts https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-query https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-set-annotations https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-store https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-sync-to-synapse https://dockstore.org/containers/registry.hub.docker.com/sequenza/sequenza https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_bwa_sbg_modified https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_delly_sbg_modified/pcawg_delly_vc_sbg_modified https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_dkfz_sbg_modified/pcawg_dkfz_vc_sbg_modified https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_muse_sbg_modified/pcawg_muse_vc_sbg_modified https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_sanger_sbg_modified/pcawg_sanger_vc_sbg_modified https://dockstore.org/containers/registry.hub.docker.com/ucsctreehouse/fusion https://dockstore.org/containers/registry.hub.docker.com/uwgac/simphen/allele_freq https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/bric-embl_delly_workflow https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/csvc https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/pcawg_delly_workflow https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/pcawg_sv_merge https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/svaba_workflow https://dockstore.org/notebooks/github.com/abessiari/my-google-collab/connecting https://dockstore.org/notebooks/github.com/broadinstitute/cromwell-task-monitor-bq-vis/example-interactive-cost-report https://dockstore.org/notebooks/github.com/broadinstitute/cromwell-task-monitor-bq-vis/example-interactive-resource-monitoring https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/GWASInitialAnalysisBlank https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/GatkCnnTutorial https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/GatkHardFilteringTutorial https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/GnomADWithBigQuery https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/GnomADWithHail https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/Intro https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/SomaticCNATutorial https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/SomaticMutect2Tutorial https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/VariantDiscoveryTutorial https://dockstore.org/notebooks/github.com/broadinstitute/terra-fw-notebooks/WorkflowCostEstimator https://dockstore.org/notebooks/github.com/david4096/croissant-rdf/croissant-rdf-example https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/connecting https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/custom https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/ibm-mlb https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/ibm-senegal https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/ibm-tax-maps https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/importing https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/notebook https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/running https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/typesetting https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/what https://dockstore.org/notebooks/github.com/denis-yuen/test-notebooks/working https://dockstore.org/notebooks/github.com/dockstore/dockstore-trs-notebook https://dockstore.org/notebooks/github.com/dockstore/example-notebook/running-code https://dockstore.org/notebooks/github.com/gks-anvil/vrs-annotator/VRSAnnotatorExampleAnalysis https://dockstore.org/notebooks/github.com/kathy-t/croissant-rdf/croissant-rdf-example https://dockstore.org/notebooks/github.com/ohsu-comp-bio/vrs-annotator/VRSAnnotatorExampleAnalysis https://dockstore.org/notebooks/github.com/paulocilasjr/pycaret-use-case/Postprocessing-LORIS https://dockstore.org/notebooks/github.com/paulocilasjr/pycaret-use-case/preprocessing https://dockstore.org/notebooks/github.com/svonworl/simple-notebook/simple https://dockstore.org/organizations/ARGO https://dockstore.org/organizations/ARGO/collections/DNAAnalysis https://dockstore.org/organizations/ARGO/collections/QualityControl https://dockstore.org/organizations/AustralianBioCommons https://dockstore.org/organizations/BioSimulators https://dockstore.org/organizations/Bioconductor https://dockstore.org/organizations/Bioconductor/collections/CNVanalysis https://dockstore.org/organizations/Bioconductor/collections/Staging https://dockstore.org/organizations/BroadInstitute https://dockstore.org/organizations/BroadInstitute/collections/Cumulus https://dockstore.org/organizations/BroadInstitute/collections/GATKWorkflows https://dockstore.org/organizations/BroadInstitute/collections/GATKforMicrobes https://dockstore.org/organizations/BroadInstitute/collections/LongReadPipelines https://dockstore.org/organizations/BroadInstitute/collections/Malaria https://dockstore.org/organizations/BroadInstitute/collections/WARPpipelines https://dockstore.org/organizations/BroadInstitute/collections/gatkToolWdl https://dockstore.org/organizations/BroadInstitute/collections/ops-terra-utils https://dockstore.org/organizations/BroadInstitute/collections/pgs https://dockstore.org/organizations/CASMSANGER https://dockstore.org/organizations/CASMSANGER/collections/CancerITtools https://dockstore.org/organizations/CDPHE https://dockstore.org/organizations/CDPHE/collections/CDPHE-bioinformatics https://dockstore.org/organizations/CDPHE/collections/CDPHEsarscov2 https://dockstore.org/organizations/CZI https://dockstore.org/organizations/CZI/collections/IDSeq https://dockstore.org/organizations/CZI/collections/miniwdl https://dockstore.org/organizations/ChaissonLab https://dockstore.org/organizations/ClinPGx https://dockstore.org/organizations/DNAstack https://dockstore.org/organizations/DNAstack/collections/dnastackCovid19Workflows https://dockstore.org/organizations/DNAstack/collections/dnastackMSSNGWorkflows https://dockstore.org/organizations/DNAstack/collections/dnastackMonkeypoxWorkflows https://dockstore.org/organizations/DNAstack/collections/dnastackPacBioWorkflows https://dockstore.org/organizations/EMBL https://dockstore.org/organizations/EMBL/collections/CNest https://dockstore.org/organizations/ENCODEDCC https://dockstore.org/organizations/ENCODEDCC/collections/Pipelines https://dockstore.org/organizations/GA4GH https://dockstore.org/organizations/GA4GH/collections/ga4ghTestbeds https://dockstore.org/organizations/GA4GH/collections/proofOfConcept https://dockstore.org/organizations/GBABI https://dockstore.org/organizations/GBABI/collections/Bio-OS https://dockstore.org/organizations/GENXT https://dockstore.org/organizations/GENXT/collections/GRAPE https://dockstore.org/organizations/GREGoR https://dockstore.org/organizations/GREGoR/collections/data-validation https://dockstore.org/organizations/H3ABioNet https://dockstore.org/organizations/H3ABioNet/collections/Metagenomics https://dockstore.org/organizations/HCA https://dockstore.org/organizations/HCA/collections/skylab https://dockstore.org/organizations/Honeycomb https://dockstore.org/organizations/Honeycomb/collections/HiveTerra https://dockstore.org/organizations/HuBMAP https://dockstore.org/organizations/HuBMAP/collections/HCASkylabPipelines https://dockstore.org/organizations/HuBMAP/collections/HuBMAP https://dockstore.org/organizations/HuBMAP/collections/nfcorePipelines https://dockstore.org/organizations/HumanPangenome https://dockstore.org/organizations/HumanPangenome/collections/Flagger-Secphase https://dockstore.org/organizations/HumanPangenome/collections/Hifiasm https://dockstore.org/organizations/HumanPangenome/collections/SequencingDataWrangling https://dockstore.org/organizations/HumanPangenome/collections/T2TCHM13 https://dockstore.org/organizations/HumanPangenome/collections/assemblyQC https://dockstore.org/organizations/IGVF https://dockstore.org/organizations/IGVF/collections/IGVF-Single-cell-pipeline https://dockstore.org/organizations/IGVF/collections/Pipelines https://dockstore.org/organizations/IGVF/collections/Tools https://dockstore.org/organizations/ImagingDataCommons https://dockstore.org/organizations/ImagingDataCommons/collections/CloudSegmentator https://dockstore.org/organizations/JGI https://dockstore.org/organizations/KarchinLab https://dockstore.org/organizations/KarchinLab/collections/opencravat https://dockstore.org/organizations/LANLBIO https://dockstore.org/organizations/LANLBIO/collections/EDGECOVID19 https://dockstore.org/organizations/LSGxE https://dockstore.org/organizations/LSGxE/collections/gxe https://dockstore.org/organizations/LSGxE/collections/utils https://dockstore.org/organizations/LifeOmic https://dockstore.org/organizations/LifeOmic/collections/LabIngestionWorkflows https://dockstore.org/organizations/MGBPM https://dockstore.org/organizations/MGBPM/collections/orchutils https://dockstore.org/organizations/MGBPM/collections/qatesting https://dockstore.org/organizations/MGI https://dockstore.org/organizations/MGI/collections/AnVIL https://dockstore.org/organizations/MGI/collections/Immunogenomics https://dockstore.org/organizations/MGI/collections/Pangenome https://dockstore.org/organizations/MontereyCountyPublicHealthLaboratory https://dockstore.org/organizations/NCPI https://dockstore.org/organizations/NCPI/collections/AnVILusecase https://dockstore.org/organizations/NIHCARD https://dockstore.org/organizations/NIHCARD/collections/NanoporeSequencing https://dockstore.org/organizations/NSRR https://dockstore.org/organizations/Nextstrain https://dockstore.org/organizations/Nextstrain/collections/pathogens https://dockstore.org/organizations/OICR https://dockstore.org/organizations/OICR/collections/RNASeq https://dockstore.org/organizations/OICR/collections/WGSAnalysisPipeline https://dockstore.org/organizations/PCAWG https://dockstore.org/organizations/PCAWG/collections/PCAWG https://dockstore.org/organizations/PRIMED https://dockstore.org/organizations/PRIMED/collections/GWAS https://dockstore.org/organizations/PRIMED/collections/GeneticAncestryInference https://dockstore.org/organizations/PRIMED/collections/Imputation https://dockstore.org/organizations/PRIMED/collections/PRS https://dockstore.org/organizations/PRIMED/collections/Reporting https://dockstore.org/organizations/PRIMED/collections/data-import https://dockstore.org/organizations/PRIMED/collections/data-validation https://dockstore.org/organizations/PRIMED/collections/file-conversion https://dockstore.org/organizations/PRIMED/collections/simulation https://dockstore.org/organizations/PacBio https://dockstore.org/organizations/PacBio/collections/Workflows https://dockstore.org/organizations/PettilabMGH https://dockstore.org/organizations/PettilabMGH/collections/Singlecellwdls https://dockstore.org/organizations/PharmGKB https://dockstore.org/organizations/RomeTherapeutics https://dockstore.org/organizations/RomeTherapeutics/collections/RNASeq https://dockstore.org/organizations/SANBI https://dockstore.org/organizations/SageBionetworks https://dockstore.org/organizations/SageBionetworks/collections/ampad https://dockstore.org/organizations/SageBionetworks/collections/iatlas https://dockstore.org/organizations/SevenBridges https://dockstore.org/organizations/SevenBridges/collections/FragPipe https://dockstore.org/organizations/SevenBridges/collections/PCAWG https://dockstore.org/organizations/SevenBridges/collections/broadbestpractices https://dockstore.org/organizations/SevenBridges/collections/genesispipelines https://dockstore.org/organizations/SharmaLab https://dockstore.org/organizations/Singleronbio https://dockstore.org/organizations/Singleronbio/collections/Singleronbio https://dockstore.org/organizations/Theiagen https://dockstore.org/organizations/Theiagen/collections/PublicHealthBacterialGenomics https://dockstore.org/organizations/Theiagen/collections/PublicHealthViralGenomics https://dockstore.org/organizations/Theiagen/collections/TerraUtilities https://dockstore.org/organizations/Theiagen/collections/public-health-bioinformatics https://dockstore.org/organizations/ThuwalBio https://dockstore.org/organizations/UCSCGI https://dockstore.org/organizations/UCSCGI/collections/PathogenGenomics https://dockstore.org/organizations/UCSCGI/collections/PathogenGenomics-TB https://dockstore.org/organizations/UCSCGI/collections/variationgraphs https://dockstore.org/organizations/UMCCR https://dockstore.org/organizations/UMCCR/collections/cwl-ica https://dockstore.org/organizations/YuanSuan https://dockstore.org/organizations/YuanSuan/collections/CRISPRscreens https://dockstore.org/organizations/YuanSuan/collections/TCRrepertoires https://dockstore.org/organizations/anvil https://dockstore.org/organizations/anvil/collections/Cumulus https://dockstore.org/organizations/anvil/collections/GATK4 https://dockstore.org/organizations/anvil/collections/GWASinAnVIL https://dockstore.org/organizations/anvil/collections/SingleCell https://dockstore.org/organizations/anvil/collections/Utilities https://dockstore.org/organizations/anvil/collections/qcwgs https://dockstore.org/organizations/bdcatalyst https://dockstore.org/organizations/bdcatalyst/collections/BDCGWAS https://dockstore.org/organizations/bdcatalyst/collections/BDCGxE https://dockstore.org/organizations/bdcatalyst/collections/Cumulus https://dockstore.org/organizations/bdcatalyst/collections/PrediXcan https://dockstore.org/organizations/bdcatalyst/collections/SVcalling https://dockstore.org/organizations/bdcatalyst/collections/TOPMedworkflows https://dockstore.org/organizations/bdcatalyst/collections/UWGACAncestryRelatedness https://dockstore.org/organizations/bdcatalyst/collections/Utilities https://dockstore.org/organizations/bdcatalyst/collections/staar https://dockstore.org/organizations/bwhbioinformaticshub https://dockstore.org/organizations/bwhbioinformaticshub/collections/RNAseq https://dockstore.org/organizations/eLwazi https://dockstore.org/organizations/eLwazi/collections/StreptSurveillance https://dockstore.org/organizations/eLwazi/collections/TEST https://dockstore.org/organizations/eLwazi/collections/viral-genomics https://dockstore.org/organizations/eLwazi/collections/workshop https://dockstore.org/organizations/gtn https://dockstore.org/organizations/gtn/collections/trainingmaterial https://dockstore.org/organizations/hcholab https://dockstore.org/organizations/iwc https://dockstore.org/organizations/iwc/collections/ComputationalChemistry https://dockstore.org/organizations/iwc/collections/Covid https://dockstore.org/organizations/iwc/collections/Imaging https://dockstore.org/organizations/iwc/collections/Metabarcoding https://dockstore.org/organizations/iwc/collections/Metaproteomics https://dockstore.org/organizations/iwc/collections/Microbiome https://dockstore.org/organizations/iwc/collections/datafetching https://dockstore.org/organizations/iwc/collections/epigenetics https://dockstore.org/organizations/iwc/collections/genome-annotation https://dockstore.org/organizations/iwc/collections/genome-assembly https://dockstore.org/organizations/iwc/collections/metagenomics https://dockstore.org/organizations/iwc/collections/proteomics https://dockstore.org/organizations/iwc/collections/single-cell https://dockstore.org/organizations/iwc/collections/transcriptomics https://dockstore.org/organizations/iwc/collections/variant-calling https://dockstore.org/organizations/iwc/collections/vgp https://dockstore.org/organizations/lilab https://dockstore.org/organizations/lilab/collections/Cumulus https://dockstore.org/organizations/msuefishlab https://dockstore.org/organizations/nfcore https://dockstore.org/organizations/nfcore/collections/pipelines https://dockstore.org/organizations/staphb https://dockstore.org/organizations/staphb/collections/sc2workflows https://dockstore.org/organizations/topmed https://dockstore.org/organizations/topmed/collections/TOPMedFreeze8 https://dockstore.org/organizations/topmed/collections/alignment https://dockstore.org/organizations/topmed/collections/freeze3variantcalling https://dockstore.org/organizations/turnerlabwustl https://dockstore.org/organizations/turnerlabwustl/collections/ACES https://dockstore.org/organizations/turnerlabwustl/collections/HAT https://dockstore.org/organizations/turnerlabwustl/collections/shortReadWGS https://dockstore.org/workflows/dockstore.org/Ali-genomics/a https://dockstore.org/workflows/dockstore.org/Alvin/minigraph https://dockstore.org/workflows/dockstore.org/Huangzehui/bwa https://dockstore.org/workflows/dockstore.org/NatalieEO/testing-version https://dockstore.org/workflows/dockstore.org/OOAAHH/spaceranger https://dockstore.org/workflows/dockstore.org/QuicksilverMachine/test_cwl https://dockstore.org/workflows/dockstore.org/Richard-Hansen/smokeTestingButProd https://dockstore.org/workflows/dockstore.org/aarong/rnaseqc https://dockstore.org/workflows/dockstore.org/abc-xzy/gatk4-1 https://dockstore.org/workflows/dockstore.org/akhadilk/MyWorkflow https://dockstore.org/workflows/dockstore.org/aphinneys/dockstore_wdls https://dockstore.org/workflows/dockstore.org/asmirnov/samtools-filter-tags https://dockstore.org/workflows/dockstore.org/biodata-integration-test-mule/lon https://dockstore.org/workflows/dockstore.org/bjstubbs/gtex https://dockstore.org/workflows/dockstore.org/bjstubbs/lunSSS https://dockstore.org/workflows/dockstore.org/brianlee731/test-workflow1 https://dockstore.org/workflows/dockstore.org/david4096/testw https://dockstore.org/workflows/dockstore.org/davidbenjamin/mutect2-dockstore https://dockstore.org/workflows/dockstore.org/denis-yuen/test https://dockstore.org/workflows/dockstore.org/ehclark/alamutbatchdev https://dockstore.org/workflows/dockstore.org/eileenzhh/test_1 https://dockstore.org/workflows/dockstore.org/ericsong/test-wdl https://dockstore.org/workflows/dockstore.org/grbot/flagstat https://dockstore.org/workflows/dockstore.org/jarroyo28/anvil-workspace-test https://dockstore.org/workflows/dockstore.org/kathy-t/my-hosted-workflow https://dockstore.org/workflows/dockstore.org/lynnlangit@gmail.com/bam-stats-demo https://dockstore.org/workflows/dockstore.org/lynnlangit@gmail.com/blastn https://dockstore.org/workflows/dockstore.org/lynnlangit@gmail.com/blastn-jupyter https://dockstore.org/workflows/dockstore.org/lynnlangit@gmail.com/blastn-test https://dockstore.org/workflows/dockstore.org/lynnlangit@gmail.com/variant-spark https://dockstore.org/workflows/dockstore.org/nicolecalamari/gatk-scripts https://dockstore.org/workflows/dockstore.org/nicolecalamari/runDeNovoSVs https://dockstore.org/workflows/dockstore.org/seanhorgan/seans-test https://dockstore.org/workflows/dockstore.org/shukwong/testOutputDir https://dockstore.org/workflows/dockstore.org/shwetagopaul92/GatherWGS https://dockstore.org/workflows/dockstore.org/shwetagopaul92/ScatterWGS https://dockstore.org/workflows/dockstore.org/tan@bioturing.com/hera-t https://dockstore.org/workflows/dockstore.org/testaccount/test2 https://dockstore.org/workflows/dockstore.org/tranhoan@broadinstitute.org/Villani https://dockstore.org/workflows/dockstore.org/vtoolgww/HW https://dockstore.org/workflows/dockstore.org/vtoolgww/plink_ld https://dockstore.org/workflows/dockstore.org/wkdeng/pileup_depmap https://dockstore.org/workflows/dockstore.org/yuliamostovoy/KmerCount https://dockstore.org/workflows/dockstore.org/zhengxc/zxctest https://dockstore.org/workflows/dockstore.org/zijing-liu/Test https://dockstore.org/workflows/dockstore.org/zx128/SSDF_Unity_python3 https://dockstore.org/workflows/github.com/5PrimeSciences/public/GARTest https://dockstore.org/workflows/github.com/5PrimeSciences/public/HelloWorld https://dockstore.org/workflows/github.com/5PrimeSciences/public/RunHarmonizer https://dockstore.org/workflows/github.com/AlexanderSenf/demo-workflows https://dockstore.org/workflows/github.com/AlexanderSenf/demo-workflows/_cwl_checker https://dockstore.org/workflows/github.com/AlexanderSenf/orgaquant https://dockstore.org/workflows/github.com/AnalysisCommons/LDGds/LDGds https://dockstore.org/workflows/github.com/AnalysisCommons/genesis_wdl/genesis_GWAS https://dockstore.org/workflows/github.com/AnalysisCommons/genesis_wdl/genesis_nullmodel https://dockstore.org/workflows/github.com/AnalysisCommons/genesis_wdl/genesis_tests https://dockstore.org/workflows/github.com/AndreRico/PharmCAT_Dockstore/Cloud_Reader https://dockstore.org/workflows/github.com/AndreRico/PharmCAT_Dockstore/PharmCAT-Pipeline https://dockstore.org/workflows/github.com/AndreRico/PharmCAT_Dockstore/PharmCAT-VCF_Preprocessor https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/WNV_refbased_assembly https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/amplicon_coverage https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/clearlabs_viral_refbased_assembly https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/cluster_analysis https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/genomic_cluster_analysis https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/ont_sc2_pubRepo_submission https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/sc2_batch_submission https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/sc2_pubRepo_submission https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/seq_run_report https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/sphl_lims_file_gen https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/sphl_lims_prep https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/terra_data_pull https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/terra_table_to_csv https://dockstore.org/workflows/github.com/AndrewLangvt/genomic_analyses/viral_refbased_assembly https://dockstore.org/workflows/github.com/ArminBoston/wdl-bootcamp-may https://dockstore.org/workflows/github.com/BD2KGenomics/dockstore_workflow_cnv https://dockstore.org/workflows/github.com/BD2KGenomics/dockstore_workflow_fusion https://dockstore.org/workflows/github.com/BD2KGenomics/dockstore_workflow_snps https://dockstore.org/workflows/github.com/BRCAChallenge/CERFAC https://dockstore.org/workflows/github.com/BRCAChallenge/CERFAC/annotate_functional_variants https://dockstore.org/workflows/github.com/BRCAChallenge/CERFAC/get_clinvar_variants https://dockstore.org/workflows/github.com/BRCAChallenge/CERFAC/get_gnomad_variants https://dockstore.org/workflows/github.com/BRCAChallenge/CERFAC/merge_clinical_data https://dockstore.org/workflows/github.com/BRCAChallenge/federated-analysis/cooccurrence https://dockstore.org/workflows/github.com/Barski-lab/ga4gh_challenge https://dockstore.org/workflows/github.com/BenjaminDoran/Filter10XData/Filter10XData https://dockstore.org/workflows/github.com/BernsteinLab/XRBS_SE https://dockstore.org/workflows/github.com/BernsteinLab/XRBS_wdl https://dockstore.org/workflows/github.com/Bioconductor/AnVILHMMRATAC https://dockstore.org/workflows/github.com/BrunoGrandePhD/dockstore-intro/_cwl_checker https://dockstore.org/workflows/github.com/BrunoGrandePhD/sarek https://dockstore.org/workflows/github.com/CCBR/HERVx https://dockstore.org/workflows/github.com/CCBR/HERVx/_wdl_checker https://dockstore.org/workflows/github.com/CCBR/ccbr1310 https://dockstore.org/workflows/github.com/CCBR/nf-sandbox https://dockstore.org/workflows/github.com/CCBR/nfcore_methylseq https://dockstore.org/workflows/github.com/CDCgov/phoenix/combine_phoenix_output https://dockstore.org/workflows/github.com/CDCgov/phoenix/phoenix https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-Enterovirus/EV-D68_illumina_pe_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-Enterovirus/EV-D68_seq_results https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-H5-influenza/h5_assembly_analysis https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-H5-influenza/h5_testing https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-RSV/RSV_illumina_pe_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-RSV/RSV_illumina_pe_summary https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_illumina_pe_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_illumina_se_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_lineage_calling_and_results https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_novel_mutations https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_ont_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_transfer_illumina_pe_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_transfer_illumina_se_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_transfer_ont_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/SC2_wastewater_variant_calling https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/Kraken2_PE_transfer https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/Kraken2_SE_transfer https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/Preprocess_illumina_pe_fastqs https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/TransferPhoenix https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/TransferTheiaProk https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-analysis-tools/preprocess_illumina_pe_fastqs1 https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-influenza/influenza_assembly https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/CDPHE-influenza/influenza_assembly_summary https://dockstore.org/workflows/github.com/CDPHE-bioinformatics/utils_workflows https://dockstore.org/workflows/github.com/CDPHE/CDPHE-SARS-CoV-2/SC2_illumina_pe_assembly https://dockstore.org/workflows/github.com/CDPHE/transfer_terra_nextstrain https://dockstore.org/workflows/github.com/CFSAN-Biostatistics/microrunqc-wdl https://dockstore.org/workflows/github.com/CRG-CNAG/EOSC-Pilot https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/Cibersort https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/EPIC https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/ImmuneSubtypeClustering https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/KallistoPairedEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/KallistoSingleEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/MCPcounter https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/MiTCRPairedEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/MiTCRSingleEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/MiXCRPairedEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/MiXCRSingleEnd https://dockstore.org/workflows/github.com/CRI-iAtlas/iatlas-workflows/SamToFastq https://dockstore.org/workflows/github.com/ChaissonLab/CARD-VNTR https://dockstore.org/workflows/github.com/ChaissonLab/GTEx-tools https://dockstore.org/workflows/github.com/ChaissonLab/L1Scan https://dockstore.org/workflows/github.com/ChaissonLab/vamos-somatic https://dockstore.org/workflows/github.com/ChiaraCabrelle/wdl-bootcamp-june-CC https://dockstore.org/workflows/github.com/CholGen/Vibecheck/vibecheck-lineage-assignment https://dockstore.org/workflows/github.com/CholGen/Vibecheck/vibecheck-lineage-assignment-reads https://dockstore.org/workflows/github.com/CholGen/bacpage/Transfer_PE_Reads_GCP https://dockstore.org/workflows/github.com/CholGen/bacpage/bacpage-assemble https://dockstore.org/workflows/github.com/CholGen/bacpage/bacpage-phylogeny https://dockstore.org/workflows/github.com/CholGen/bacpage/bacpage-quality-assessment https://dockstore.org/workflows/github.com/Cristianetaniguti/Reads2Map/EmpiricalMaps https://dockstore.org/workflows/github.com/Cristianetaniguti/Reads2Map/EmpiricalSNPCalling https://dockstore.org/workflows/github.com/Cristianetaniguti/Reads2Map/SimulatedReads2Map https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv-utils/IndexClusteredVcfs https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/CohortEvidenceQC https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/GatherBatchEvidence https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/NullGenotypes https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/RescueMobileElementDeletions https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/TinyResolve https://dockstore.org/workflows/github.com/CuriousTim/gatk-sv/VisualizeCnvs https://dockstore.org/workflows/github.com/DNAstack/PacBio/CoSA-CoronavirusSequencingAnalysis https://dockstore.org/workflows/github.com/DNAstack/PacBio/TRGT-TandemRepeatGenotyper https://dockstore.org/workflows/github.com/DNAstack/covid-processing-pipeline/Illumina_SARS-CoV-2 https://dockstore.org/workflows/github.com/DNAstack/covid-processing-pipeline/Oxford_Nanopore_SARS-CoV-2 https://dockstore.org/workflows/github.com/DNAstack/covid-processing-pipeline/covid-19-varcal-from-assembly https://dockstore.org/workflows/github.com/DNAstack/monkeypox-processing-pipeline https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-ccdg-alignment-and-calling https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-exract-valid-chromosome-vcfs https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-joint-genotype-by-region https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-joint-genotype-merge-by-chr https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-variant-metrics https://dockstore.org/workflows/github.com/DNAstack/mssng-db6-vqsr https://dockstore.org/workflows/github.com/DNAstack/sample-workflows https://dockstore.org/workflows/github.com/DNAstack/sentieon-amazon-omics/sentieon-germline https://dockstore.org/workflows/github.com/DNAstack/sentieon-amazon-omics/sentieon-longread https://dockstore.org/workflows/github.com/DNAstack/sentieon-amazon-omics/sentieon-somatic-wgs https://dockstore.org/workflows/github.com/DNAstack/wdl-mothur/wdl-mothur https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/Apollo_Illumina_PE_WAPHL_DeNovo https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/Pangenome_SNP_WAPHL https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/Prepare_References https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/Recomb_aware_phylo_analysis_waphl https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/TheiaProk_Illumina_PE_WAPHL https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/WAPHL_bs_fetch https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/WAPHL_report https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/build_bacterial_consensus https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/cgMLST https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/create_cgMLST_schema https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/fetch_from_zip https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/kSNP3 https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/prep_bigdb_cgmlst https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bacterial_genomics/recomb_clade_analysis https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/Freyja_FASTQ_PHB https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/RECAPP https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/TheiaCoV_Illumina_PE_PHB https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/TheiaProk_Illumina_PE_WAPHL https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/WW_for_Epi_PHB https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/kSNP4_WAPHL https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_bioinformatics_waphl/recomb_clade_analysis https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_viral_genomics_freyja_fastq_WAPHL/Freyja_FASTQ_WAPHL https://dockstore.org/workflows/github.com/DOH-HNH0303/public_health_viral_genomics_freyja_fastq_WAPHL/WW_for_Epi https://dockstore.org/workflows/github.com/DOH-HNH0303/wgs_tools/DeNovo_build_bacterial_consensus https://dockstore.org/workflows/github.com/DOH-JDJ0303/Phylophoenix https://dockstore.org/workflows/github.com/DOH-JDJ0303/VAPER https://dockstore.org/workflows/github.com/DOH-JDJ0303/bigbacter-nf https://dockstore.org/workflows/github.com/DOH-JDJ0303/bs-fetch-nf https://dockstore.org/workflows/github.com/DOH-JDJ0303/epitome https://dockstore.org/workflows/github.com/DOH-JDJ0303/refmaker https://dockstore.org/workflows/github.com/DOH-JDJ0303/sieve-nf https://dockstore.org/workflows/github.com/DOH-JDJ0303/tb_report https://dockstore.org/workflows/github.com/DOH-JDJ0303/vaper https://dockstore.org/workflows/github.com/DOH-JDJ0303/waphl-terra2aws https://dockstore.org/workflows/github.com/DOH-JDJ0303/waphl-viral-mc/waphl-viral-mc https://dockstore.org/workflows/github.com/DOH-KEW4303/public_health_bacterial_genomics/Seqsend_File_Prep_WAPHL https://dockstore.org/workflows/github.com/DOH-KEW4303/public_health_bacterial_genomics/Seqsender_Update https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/assocation-aggregate-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/assocation-aggregate-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/king-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/king-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/ld-pruning-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/ld-pruning-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/null-model-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/null-model-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/pc-air-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/pc-air-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/pc-relate-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/pc-relate-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/vcf-to-gds-wdl https://dockstore.org/workflows/github.com/DataBiosphere/analysis_pipeline_WDL/vcf-to-gds-wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/cwl-tool-wrapper-workflow https://dockstore.org/workflows/github.com/DataBiosphere/terra-examples/notebook_workflow https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/CompareVcfs https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/CreateImputationRefPanelBeagle https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/DuplicateVcfAndMerge https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/ImputationBeagleEmpty https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/QuotaConsumedEmpty https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/ReshapeReferencePanel https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/StdPopSim https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/SubsetVcfByBedFile https://dockstore.org/workflows/github.com/DataBiosphere/terra-scientific-pipelines-service/UpdateVcfDictionaryHeader https://dockstore.org/workflows/github.com/DataBiosphere/toolbox/CRAM_md5sum_cwl https://dockstore.org/workflows/github.com/DataBiosphere/toolbox/CRAM_md5sum_cwl_cwl_checker https://dockstore.org/workflows/github.com/DataBiosphere/toolbox/CRAM_md5sum_wdl https://dockstore.org/workflows/github.com/DataBiosphere/toolbox/CRAM_md5sum_wdl_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflow-variant-calling https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflow-variant-calling/_wdl_checker https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/CCDG_aligner_functional_equivalent_cwl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/CCDG_aligner_functional_equivalent_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/UM_aligner_cwl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/UM_aligner_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/UM_variant_caller_cwl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/UM_variant_caller_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/checker_CCDG_aligner_functional_equivalent_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/checker_UM_aligner_cwl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/checker_UM_aligner_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/checker_UM_variant_caller_cwl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/checker_UM_variant_caller_wdl https://dockstore.org/workflows/github.com/DataBiosphere/topmed-workflows/gatk-vcf-comparator https://dockstore.org/workflows/github.com/DataBiosphere/xvcfmerge https://dockstore.org/workflows/github.com/DataBiosphere/xvcfmerge/xvcfmerge https://dockstore.org/workflows/github.com/DataBiosphere/xvcfsubsample/xvcfsubsample https://dockstore.org/workflows/github.com/DataBiosphere/xvcfview https://dockstore.org/workflows/github.com/DataBiosphere/xvcfview/xvcfview https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF3-Assembly https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF4-Assembly_with_HiC https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF5-Assembly_trio https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF6-Purgedups https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF7-Scaffolding_Bionano https://dockstore.org/workflows/github.com/Delphine-L/iwc/Export-WF8-Scaffolding_HiC https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF1-kmer_profiling_and_QC https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF2-kmer_profiling_and_QC_trio https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF3-Assembly https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF4-Assembly_with_HiC https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF5-Assembly_trio https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF6-Purgedups https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF61-Purgedups-custom_cutoffs_primary https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF62-Purgedups-custom_cutoffs_alternate https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF7-Scaffolding_Bionano https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF8a-Scaffolding_HiC_Yahs https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF8b-Scaffolding_HiC_Salsa2 https://dockstore.org/workflows/github.com/Delphine-L/iwc/WF9-Decontamination https://dockstore.org/workflows/github.com/DockstoreTestUser/dockstore-whalesay/dockstore-whalesay-wdl https://dockstore.org/workflows/github.com/Dongwon-Lee/gkmsvm_pipeline_test https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/ASE https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/Strip-Reads-From-BAM https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/T2T-alignment https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/T2T-genomics-db https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/collate_ASE_stats https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/collate_quant_diffs https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/collate_raw_quants https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/collate_xy_quants https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/haplotype-calling-chrom-female https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/joint-genotyping https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/process_ASE https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/process_quants https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/salmon https://dockstore.org/workflows/github.com/DrPintoThe2nd/XYalign_AC3/split_genotypes_for_ASE https://dockstore.org/workflows/github.com/Dzeiberg/ismb2024 https://dockstore.org/workflows/github.com/ENCODE-DCC/atac-seq-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/chip-seq-pipeline2 https://dockstore.org/workflows/github.com/ENCODE-DCC/chip-seq-pipeline2/fastq_processing https://dockstore.org/workflows/github.com/ENCODE-DCC/hic-pipeline/hic-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/long-read-rna-pipeline/long-read-rna-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/mirna-seq-pipeline/mirna-seq-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/mirna-seq-pipeline/mirna-seq-pipeline_wdl_checker https://dockstore.org/workflows/github.com/ENCODE-DCC/rna-seq-pipeline/rna-seq-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/segway-pipeline/segway-pipeline https://dockstore.org/workflows/github.com/ENCODE-DCC/wgbs-pipeline/wgbs-pipeline https://dockstore.org/workflows/github.com/EiffL/TXPipe https://dockstore.org/workflows/github.com/Epigenomics-Screw/Screw/screw-preprocess https://dockstore.org/workflows/github.com/FaithGriffin/Candida https://dockstore.org/workflows/github.com/FaithGriffin/CandidaPhylo https://dockstore.org/workflows/github.com/FusionInspector/FusionInspector/fusion_inspector https://dockstore.org/workflows/github.com/GA4GH-DREAM/dockstore-workflow-helloworld/dockstore-workflow-helloworld https://dockstore.org/workflows/github.com/GargGroup/BioDivGenomics/bio-diversity-genomics-garg https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/01-GatherSampleEvidence https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/02-EvidenceQC https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/03-TrainGCNV https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/04-GatherBatchEvidence https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/05-ClusterBatch https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/06-GenerateBatchMetrics https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/07-FilterBatchSites https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/08-FilterBatchSamples https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/09-MergeBatchSites https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/10-GenotypeBatch https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/11-RegenotypeCNVs https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/12-CombineBatches https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/13-ResolveComplexVariants https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/14-GenotypeComplexVariants https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/15-CleanVcf https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/16-RefineComplexVariants https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/17-JoinRawCalls https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/18-SVConcordance https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/19-FilterGenotypes https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/20-AnnotateVcf https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/FilterOutlierSamples https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/GATKSVPipelineSingleSample https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/MainVcfQc https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/PlotSVCountsPerSample https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gatk-sv/VisualizeCnvs https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/gml-expansion-hunter/GMLExpansionHunter https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/mocha-wgs/MochaWgsPreprocess https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/AS_VQSR https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/CramToSubsetBam https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/ReblockGVCF https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/WholeGenomeFromFastq https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/Garvan-Data-Science-Platform/warp/WholeGenomeReprocessing https://dockstore.org/workflows/github.com/Genometric/gatk-sv-dockstore/AnnotateVcf https://dockstore.org/workflows/github.com/GrantDaly/mitochondrial-alignments/AlignSample https://dockstore.org/workflows/github.com/GrantDaly/mitochondrial-alignments/CallPileup https://dockstore.org/workflows/github.com/GrantDaly/mitochondrial-alignments/PostProcess https://dockstore.org/workflows/github.com/GrootJ/ismb2024 https://dockstore.org/workflows/github.com/HNHalstead/doh_terra_hold https://dockstore.org/workflows/github.com/HarshpreetChandok/terra_testing1/example_1 https://dockstore.org/workflows/github.com/Huangzehui/test https://dockstore.org/workflows/github.com/Huangzehui/test/abbbbbbbb https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools/pcawg-oxog-full-workflow https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools/zip-and-index-vcf https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow/_cwl_checker https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/pcawg-gatk-cocleaning https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/pcawg-minibam https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/wdl-pcawg-bwa-mem-workflow https://dockstore.org/workflows/github.com/ICGC-TCGA-PanCancer/wdl-pcawg-sanger-cgp-workflow https://dockstore.org/workflows/github.com/IGVF/atomic-workflows/IGVF-sample_fastqs https://dockstore.org/workflows/github.com/IGVF/single-cell-pipeline/IGVF-check_inputs https://dockstore.org/workflows/github.com/IGVF/single-cell-pipeline/IGVF-chromap_index https://dockstore.org/workflows/github.com/IGVF/single-cell-pipeline/IGVF-kb_index https://dockstore.org/workflows/github.com/IGVF/single-cell-pipeline/IGVF-single_cell_pipeline https://dockstore.org/workflows/github.com/IMCM-OX/terra-wdl-demo https://dockstore.org/workflows/github.com/IfrahTariq/analysis-wdls/detect_variants https://dockstore.org/workflows/github.com/IfrahTariq/analysis-wdls/immuno https://dockstore.org/workflows/github.com/IfrahTariq/analysis-wdls/somatic_exome https://dockstore.org/workflows/github.com/IfrahTariq/bulkrnaseq/bulkRNA_workflow https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/annotate_variants https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/hgvs https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/mask_variants https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/opencravat_dm https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/remove_filtered https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/vcf2maf https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/vcf_to_csv https://dockstore.org/workflows/github.com/IfrahTariq/variant_annotation/vcf_to_depmap https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/TotalSegmentatorOneVmWorkflowOnTerra https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/TotalSegmentatorthreeVmWorkflowOnSB-CGC https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/TotalSegmentatorthreeVmWorkflowOnTerra https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/TotalSegmentatortwoVmWorkflowOnSB-CGC https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/TotalSegmentatortwoVmWorkflowOnTerra https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/convertRadiomicsJsonToDataframeOnTerra https://dockstore.org/workflows/github.com/ImagingDataCommons/CloudSegmentator/perFrameFunctionalGroupSequenceExtractionOnTerra https://dockstore.org/workflows/github.com/JCVenterInstitute/CAMRA/CAMRA-AMR_Detection-WDL https://dockstore.org/workflows/github.com/JCVenterInstitute/CAMRA/CAMRA-Assembly_Quality_Control-WDL https://dockstore.org/workflows/github.com/JCVenterInstitute/CAMRA/annotation_analysis https://dockstore.org/workflows/github.com/JCVenterInstitute/CAMRA/genome_assembly https://dockstore.org/workflows/github.com/Jeltje/integrate https://dockstore.org/workflows/github.com/Jemimacat/TRUST4_bam_hg38 https://dockstore.org/workflows/github.com/Jemimacat/TRUST4_bam_hg38/_wdl_checker https://dockstore.org/workflows/github.com/Jithin-S-Sunny/ISMB2024 https://dockstore.org/workflows/github.com/JunhuiLi1017/MosaicVariantsPredict/mosaic_prediction https://dockstore.org/workflows/github.com/KarchinLab/opencravat-cwl https://dockstore.org/workflows/github.com/KarchinLab/opencravat-cwl/opencravat-install https://dockstore.org/workflows/github.com/Kayla-Morrell/AnVILBulkRNASeq https://dockstore.org/workflows/github.com/Kincekara/C-BIRD/C-BIRDv2 https://dockstore.org/workflows/github.com/Kincekara/C-BIRD/cbird-insert_size_dist https://dockstore.org/workflows/github.com/Kincekara/C-BIRD/cbird-workflow https://dockstore.org/workflows/github.com/Kincekara/LegioWorld/Legio_ID https://dockstore.org/workflows/github.com/Kincekara/LegioWorld/Mash_DB_Prep https://dockstore.org/workflows/github.com/Kincekara/SNVPhyl_Terra/SNVPhyl https://dockstore.org/workflows/github.com/Kincekara/cbird-report/cbird-clia-report https://dockstore.org/workflows/github.com/Kincekara/terra_tools/SRA_prep https://dockstore.org/workflows/github.com/KnowEnG/cwl-gene-prioritization https://dockstore.org/workflows/github.com/LappalainenLab/workflows https://dockstore.org/workflows/github.com/LauraEgolf/sv-pipeline/Pre_Merge_SV_Single https://dockstore.org/workflows/github.com/LinkunGao/dock-workflow https://dockstore.org/workflows/github.com/MASPHL/wdl_scripts/amplicon_coverage https://dockstore.org/workflows/github.com/MASPHL/wdl_scripts/genomic_cluster_analysis https://dockstore.org/workflows/github.com/MASPHL/wdl_scripts/seq_run_report https://dockstore.org/workflows/github.com/MASPHL/wdl_scripts/sphl_lims_file_gen https://dockstore.org/workflows/github.com/MASPHL/wdl_scripts/sphl_lims_file_prep https://dockstore.org/workflows/github.com/MeHelmy/wdl-bootcamp https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/cpc2_anno https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/func_anno_main https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/iupred2a_anno https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/pfam_anno https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/signalp6_anno https://dockstore.org/workflows/github.com/MethodsDev/IsoFuncAnnot/tmhmm_anno https://dockstore.org/workflows/github.com/MethodsDev/LongReadAlignmentAssembler/LRAA https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark/IsoQuant-v2 https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark/IsoSeq-v2 https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/BAMBU https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/ESPRESSO https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/FLAIR https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/FLAMES https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/ISOFORM_ID_QUANT_BENCHMARKING https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/ISOQUANT https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/ISOSEQ https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/IsoformsQuantOnly https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/IsoformsRefAnnotFreeDenovoID https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/IsoformsRefGuidedID https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/Isosceles https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/LRAA_split https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/LRQuant https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/MANDALORION https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/OARFISH https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/SALMON https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/STRINGTIE https://dockstore.org/workflows/github.com/MethodsDev/iso-reconstruct-benchmark2/TALON https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/bulk_demux https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/masseq_main https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/merge_main https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/pbrefine_main https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/pbskera_main https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/sc_isoseq_groupdedup https://dockstore.org/workflows/github.com/MethodsDev/masseq_data_processing/sc_kinnex_lima_plus_isoseq https://dockstore.org/workflows/github.com/MethodsDev/masseq_sc_data_processing/main https://dockstore.org/workflows/github.com/MethodsDev/masseq_sc_data_processing/pbtools https://dockstore.org/workflows/github.com/MilanParikh/LINE1_workflow https://dockstore.org/workflows/github.com/MilanParikh/MAST_workflow https://dockstore.org/workflows/github.com/MilanParikh/cellphonedb_workflow https://dockstore.org/workflows/github.com/MilanParikh/cluster_robustness_workflow https://dockstore.org/workflows/github.com/MilanParikh/hotspot_workflow https://dockstore.org/workflows/github.com/MilanParikh/infercnv_workflow https://dockstore.org/workflows/github.com/MilanParikh/numbat_workflow https://dockstore.org/workflows/github.com/MilanParikh/samtools_index https://dockstore.org/workflows/github.com/MilanParikh/sceptre_workflow https://dockstore.org/workflows/github.com/MilanParikh/seacells_workflow https://dockstore.org/workflows/github.com/MilanParikh/soupx_workflow https://dockstore.org/workflows/github.com/MilanParikh/spectra_workflow https://dockstore.org/workflows/github.com/Mo7ammedFarahat/RNASeq_WDL/RNASeq_WDL https://dockstore.org/workflows/github.com/MontereyCoPHL/Illumina_scripts/MultiQC_PE https://dockstore.org/workflows/github.com/MontereyCoPHL/Serratia_pipeline/Fastqc_Aggregate https://dockstore.org/workflows/github.com/MontereyCoPHL/Serratia_pipeline/Serratia_Assemble https://dockstore.org/workflows/github.com/MontereyCoPHL/Serratia_pipeline/Serratia_Preprocess https://dockstore.org/workflows/github.com/MontereyCoPHL/Serratia_pipeline/get_coverage https://dockstore.org/workflows/github.com/Mushriq/wdlexample https://dockstore.org/workflows/github.com/NCI-GDC/gdc-dnaseq-cwl/GDC_DNASeq https://dockstore.org/workflows/github.com/NCIP/ctat-mutations/ctat_mutations https://dockstore.org/workflows/github.com/NCIP/ctat-mutations/hg19_ctat_mutations https://dockstore.org/workflows/github.com/NCIP/ctat-mutations/hg38_ctat_mutations https://dockstore.org/workflows/github.com/NatalieEO/gatk4-somatic-cnvs https://dockstore.org/workflows/github.com/Nehir291/wdl-bootcamp-nov https://dockstore.org/workflows/github.com/Overcraft90/pangenie_wdl/pangenie https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/PCA_projection/LD_pruning https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/PCA_projection/create_pca_projection https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/PCA_projection/pca_plots https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/PCA_projection/projected_PCA https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/PCA_projection/select_variants_by_pop_maf https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/admixture_merge_ref_pruning/AdmixtureTest https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/basic_admixture/basic_admixture https://dockstore.org/workflows/github.com/PRIMED-Ancestry-Inference/basic_admixture/projected_admixture https://dockstore.org/workflows/github.com/PacificBiosciences/HiFi-MAG-WDL/HiFi-MAG-WDL https://dockstore.org/workflows/github.com/PacificBiosciences/HiFi-human-WGS-WDL/HiFi-human-WGS-WDL https://dockstore.org/workflows/github.com/PacificBiosciences/HiFi-human-WGS-WDL/HiFi-human-WGS-WDL-family https://dockstore.org/workflows/github.com/PacificBiosciences/HiFi-human-WGS-WDL/HiFi-human-WGS-WDL-singleton https://dockstore.org/workflows/github.com/PacificBiosciences/HiFi-human-assembly-WDL/HiFi-human-assembly-WDL https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/Collapse-Channels https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/List-Channels https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/SegmentAnalysis https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/assign_segment_types https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/boostrap-mibi-pixels https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/expand_segmentation https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/mesmer-segmentation-full https://dockstore.org/workflows/github.com/ParkerICI/mesmer-wdl-workflow/run_segment_typing https://dockstore.org/workflows/github.com/ParkerICI/single_cell_workflows/bam_to_fastq https://dockstore.org/workflows/github.com/ParkerICI/single_cell_workflows/rnaseq https://dockstore.org/workflows/github.com/PharmGKB/PharmCAT/PharmCAT-Pipeline https://dockstore.org/workflows/github.com/PlasmoGenEpi/plasmodiumdrugres-wdl/plasmodiumdrugres https://dockstore.org/workflows/github.com/RCollins13/proactive_wgs/SubsetRareVariants https://dockstore.org/workflows/github.com/Richard-Hansen/dockstore-tool-helloworld https://dockstore.org/workflows/github.com/Richard-Hansen/dockstore-whalesay https://dockstore.org/workflows/github.com/Richard-Hansen/dockstore-whalesay2 https://dockstore.org/workflows/github.com/Richard-Hansen/hello_world https://dockstore.org/workflows/github.com/Richard-Hansen/test-workflows-and-tools https://dockstore.org/workflows/github.com/SBIMB/GS-test/spn-nf https://dockstore.org/workflows/github.com/SBIMB/GS-test/strepA-nf https://dockstore.org/workflows/github.com/SBIMB/GS-test/strepB-nf https://dockstore.org/workflows/github.com/SBIMB/StellarPGx/StellarPGx https://dockstore.org/workflows/github.com/STAR-Fusion/STAR-Fusion/star_fusion_hg19 https://dockstore.org/workflows/github.com/STAR-Fusion/STAR-Fusion/star_fusion_hg38v22 https://dockstore.org/workflows/github.com/Sage-Bionetworks-Workflows/dockstore-tool-synapseclient/synapse-get-annotations_cwl_checker https://dockstore.org/workflows/github.com/Sage-Bionetworks-Workflows/nf-dcqc https://dockstore.org/workflows/github.com/Sage-Bionetworks-Workflows/nf-synapse-stage https://dockstore.org/workflows/github.com/Sage-Bionetworks-Workflows/nf-vcf2maf https://dockstore.org/workflows/github.com/Sage-Bionetworks-Workflows/sarek https://dockstore.org/workflows/github.com/SaviKoissi/wdl-bookcamp-may/wld_2 https://dockstore.org/workflows/github.com/SciDAP/workflows/xenbase-rnaseq-se https://dockstore.org/workflows/github.com/SciLifeLab/Sarek/Sarek https://dockstore.org/workflows/github.com/ShalekLab/alexandria/SeqWellTCR https://dockstore.org/workflows/github.com/ShalekLab/alexandria/cellranger_cumulus https://dockstore.org/workflows/github.com/ShalekLab/alexandria/dropseq_cumulus https://dockstore.org/workflows/github.com/ShalekLab/alexandria/kallisto-bustools_cumulus https://dockstore.org/workflows/github.com/ShalekLab/alexandria/smartseq2_cumulus https://dockstore.org/workflows/github.com/ShalekLab/ampliconBCR https://dockstore.org/workflows/github.com/ShalekLab/ampliconBCR/ampliconBCR_solo https://dockstore.org/workflows/github.com/ShalekLab/archiving-pipeline/Archive https://dockstore.org/workflows/github.com/ShalekLab/archiving-pipeline/UnArchive https://dockstore.org/workflows/github.com/ShalekLab/kallisto-bustools_workflow https://dockstore.org/workflows/github.com/ShalekLab/mixcr_workflow https://dockstore.org/workflows/github.com/ShalekLab/tcrgo/TCRGO https://dockstore.org/workflows/github.com/ShiyuLuo-2421/wdl-101-bam https://dockstore.org/workflows/github.com/Shrishtee-kandoi/wdl-bootcamp-june https://dockstore.org/workflows/github.com/TAG-Workflows/perturbSeq/perturbSeq https://dockstore.org/workflows/github.com/TNTurnerLab/Hare/Hare https://dockstore.org/workflows/github.com/TNTurnerLab/wdl_workflows/ACES_workflow https://dockstore.org/workflows/github.com/TNTurnerLab/wdl_workflows/QuicKmer2 https://dockstore.org/workflows/github.com/TesVal/ismb2024 https://dockstore.org/workflows/github.com/TrinityCTAT/CTAT-LR-fusion/ctat_LR_fusion https://dockstore.org/workflows/github.com/TrinityCTAT/ctat-mutations-benchmarking/ctat_mutations_benchmarking https://dockstore.org/workflows/github.com/TrinityCTAT/ctat-mutations/ctat_mutations https://dockstore.org/workflows/github.com/TrinityCTAT/ctat-mutations/hg38_ctat_mutations https://dockstore.org/workflows/github.com/UPHL-BioNGS/Cecret https://dockstore.org/workflows/github.com/UPHL-BioNGS/Donut_Falls https://dockstore.org/workflows/github.com/UPHL-BioNGS/Grandeur https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/get_ref https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/run_admix https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/run_data_model https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/run_hapgen https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/sim_admixed https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/subset_pop https://dockstore.org/workflows/github.com/UW-GAC/admix-kit_workflow/subset_ref https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/backup_data_tables https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/check_md5 https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/data_dictionary_report https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/data_model_report https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/data_table_export https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/data_table_import https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/md5_hex https://dockstore.org/workflows/github.com/UW-GAC/anvil-util-workflows/validate_data_model https://dockstore.org/workflows/github.com/UW-GAC/fetch-dbgap-files/fetch_dbgap_files_wdl https://dockstore.org/workflows/github.com/UW-GAC/gregor-file-checks/ExtractHeader https://dockstore.org/workflows/github.com/UW-GAC/gregor-file-checks/check_bam_sample https://dockstore.org/workflows/github.com/UW-GAC/gregor-file-checks/check_vcf_samples https://dockstore.org/workflows/github.com/UW-GAC/gregor-file-checks/validate_gregor_model https://dockstore.org/workflows/github.com/UW-GAC/gregor_wgs_processing/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/UW-GAC/parse-dbgap-application/parse_dbgap_application https://dockstore.org/workflows/github.com/UW-GAC/pgsc_calc_wdl/pgsc_calc https://dockstore.org/workflows/github.com/UW-GAC/primed-bcftools/extract_vcf_ids https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/check_vcf_samples https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/gsr_data_report https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/pheno_qc https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/validate_genotype_model https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/validate_gsr_model https://dockstore.org/workflows/github.com/UW-GAC/primed-file-checks/validate_phenotype_model https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/bcftools_merge https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/bcftools_merge_overlap https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/liftover_vcf https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/plink2_bed2vcf https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/plink2_pgen2bed https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/plink2_vcf2bed https://dockstore.org/workflows/github.com/UW-GAC/primed-file-conversion/plink2_vcf2pgen https://dockstore.org/workflows/github.com/UW-GAC/primed-genesis-gwas/primed_genesis_gwas https://dockstore.org/workflows/github.com/UW-GAC/primed-imputation/chrom_split https://dockstore.org/workflows/github.com/UW-GAC/primed-imputation/imputation_server_results https://dockstore.org/workflows/github.com/UW-GAC/primed-imputation/imputation_server_submit https://dockstore.org/workflows/github.com/UW-GAC/primed-imputation/imputed_data_model https://dockstore.org/workflows/github.com/UW-GAC/primed-inventory-workflows/primed_ancestry_analysis_inventory https://dockstore.org/workflows/github.com/UW-GAC/primed-inventory-workflows/primed_association_analysis_inventory https://dockstore.org/workflows/github.com/UW-GAC/primed-inventory-workflows/primed_genotype_inventory https://dockstore.org/workflows/github.com/UW-GAC/primed-inventory-workflows/primed_inventories https://dockstore.org/workflows/github.com/UW-GAC/primed-inventory-workflows/primed_phenotype_inventory https://dockstore.org/workflows/github.com/UW-GAC/primed-pgs-queries/map_pubmed_ids_to_pgs_catalog https://dockstore.org/workflows/github.com/UW-GAC/primed-pgs-queries/pgs_variant_overlap https://dockstore.org/workflows/github.com/UW-GAC/primed-reports/primed_icite_report https://dockstore.org/workflows/github.com/UW-GAC/primed_ukbb_gsr/download_pan_ukbb https://dockstore.org/workflows/github.com/UW-GAC/simulate_phenotypes/allele_freq https://dockstore.org/workflows/github.com/UW-GAC/simulate_phenotypes/iterative_ld_pruning https://dockstore.org/workflows/github.com/UW-GAC/simulate_phenotypes/simulate_correlated_outcomes https://dockstore.org/workflows/github.com/UW-GAC/simulate_phenotypes/simulate_outcomes_with_effects https://dockstore.org/workflows/github.com/UW-GAC/simulate_phenotypes/simulate_variant_effects https://dockstore.org/workflows/github.com/UW-GAC/wdl_test/hello https://dockstore.org/workflows/github.com/VJalili/gatk-sv https://dockstore.org/workflows/github.com/WeiweiBian/Cloud_Development https://dockstore.org/workflows/github.com/WeiweiBian/wdl_test https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/STAR_2.7.4a https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/STAR_2.7.4a/_wdl_checker https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/TRUST4_0.2.0 https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/TRUST4_0.2.0/_wdl_checker https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/TRUST4_0.2.0_PE https://dockstore.org/workflows/github.com/Wenhui-Jemima-Li/TRUST4_0.2.0_PE/_wdl_checker https://dockstore.org/workflows/github.com/WhiteLabGenomics/TerraPipelines_BulkRNAseq/bulkRNA_workflow https://dockstore.org/workflows/github.com/WhiteLabGenomics/bulkAtlas https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines/bulkRNA_germline_variant_workflow https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines/bulkRNA_workflow https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines/optimus_workflow https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines/smartseq_multi_sample_workflow https://dockstore.org/workflows/github.com/WhiteLabGenomics/terraPipelines/smartseq_single_sample_workflow https://dockstore.org/workflows/github.com/Xinglab/rmats-turbo/rmats-turbo-cwl https://dockstore.org/workflows/github.com/Xinglab/rmats-turbo/rmats-turbo-nextflow https://dockstore.org/workflows/github.com/Xinglab/rmats-turbo/rmats-turbo-wdl https://dockstore.org/workflows/github.com/aawdeh/feb_9_practice_2/WDL-PRACTICE https://dockstore.org/workflows/github.com/abelhj/sv-pipeline/Pre_Merge_SV_v2_terra https://dockstore.org/workflows/github.com/achilleasNP/rvtests_wdl/rvtest https://dockstore.org/workflows/github.com/achilleasNP/rvtests_wdl/vcf2kinship https://dockstore.org/workflows/github.com/adamnovak/fizzbuzz/FizzBuzz https://dockstore.org/workflows/github.com/aednichols/test-wdls https://dockstore.org/workflows/github.com/afgane/galaxy-workflows https://dockstore.org/workflows/github.com/afshinmessiah/PyDicomVerify/MfConversion https://dockstore.org/workflows/github.com/afshinmessiah/Workflow_PrognosisInput/Preprocessing https://dockstore.org/workflows/github.com/afshinmessiah/gcp-ai-lung1-deep-prognosis/main_pipeline https://dockstore.org/workflows/github.com/afshinmessiah/test_workflow00 https://dockstore.org/workflows/github.com/akankshakhorgade/wdl-bootcamp-may https://dockstore.org/workflows/github.com/akurlovs/ismb2024 https://dockstore.org/workflows/github.com/alexanderhsieh/BamToUnmappedBam/BamToUnmappedBam_noRG https://dockstore.org/workflows/github.com/alexanderhsieh/CramToBam/CramToBam https://dockstore.org/workflows/github.com/alexanderhsieh/EM-mosaic-pipeline/EM-mosaic-pipeline https://dockstore.org/workflows/github.com/alexanderhsieh/annotate_and_filter/annotate_and_filter https://dockstore.org/workflows/github.com/alexanderhsieh/annotate_variants/annotate_variants https://dockstore.org/workflows/github.com/alexanderhsieh/apply_filters/apply_filters https://dockstore.org/workflows/github.com/alexanderhsieh/estimate_cohort_allele_frequency/estimate_cohort_allele_frequency https://dockstore.org/workflows/github.com/alexanderhsieh/filtered_denovos_to_mosaic/filtered_denovos_to_mosaic https://dockstore.org/workflows/github.com/alexanderhsieh/gatk4-exome-analysis-pipeline/gatk4-exome-analysis-pipeline https://dockstore.org/workflows/github.com/alexanderhsieh/gatk4-germline-snps-indels/gatk4-germline-snps-indels-AH https://dockstore.org/workflows/github.com/alexanderhsieh/gvcf_to_denovo/gvcf_to_denovo https://dockstore.org/workflows/github.com/alexanderhsieh/igv_in_terra/igv_in_terra https://dockstore.org/workflows/github.com/alexanderhsieh/merge_gvcfs/merge-gvcfs https://dockstore.org/workflows/github.com/alexanderhsieh/test_object/test_object https://dockstore.org/workflows/github.com/alexanderhsieh/test_read_tsv/test_read_tsv https://dockstore.org/workflows/github.com/alexandersenf/orgaquant/_cwl_checker https://dockstore.org/workflows/github.com/amanpatel101/chromatin-atlas-anvil/chrombpnet-interpret https://dockstore.org/workflows/github.com/amanpatel101/chromatin-atlas-anvil/hello-world https://dockstore.org/workflows/github.com/anand-imcm/get-variant-info https://dockstore.org/workflows/github.com/anand-imcm/joint-model-analysis https://dockstore.org/workflows/github.com/anand-imcm/pb-variant-call https://dockstore.org/workflows/github.com/anand-imcm/pd_348_variant_extraction_genotyped_hg19 https://dockstore.org/workflows/github.com/anand-imcm/proteomics-ML-workflow https://dockstore.org/workflows/github.com/anand-imcm/wf-pb-amp https://dockstore.org/workflows/github.com/aofarrel/BAM-to-CRAM-WDL https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/get_all_organisms_from_bioproject https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/get_all_organisms_from_biosample https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/get_biosample_accessions_from_run_accessions https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/pull_FASTQs_from_SRA_by_BioProject https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/pull_FASTQs_from_SRA_by_biosample https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/pull_FASTQs_from_SRA_by_biosample_nofile https://dockstore.org/workflows/github.com/aofarrel/SRANWRP/pull_FASTQs_from_SRA_by_run https://dockstore.org/workflows/github.com/aofarrel/TBfastProfiler/TBfastProfiler https://dockstore.org/workflows/github.com/aofarrel/clockwork-wdl/clockwork_gvcf_from_minos_and_samtools https://dockstore.org/workflows/github.com/aofarrel/clockwork-wdl/clockwork_reference_prepare https://dockstore.org/workflows/github.com/aofarrel/clockwork-wdl/clockwork_tuberculosis_example https://dockstore.org/workflows/github.com/aofarrel/covstats-wdl https://dockstore.org/workflows/github.com/aofarrel/covstats-wdl/_wdl_checker https://dockstore.org/workflows/github.com/aofarrel/decon/decon https://dockstore.org/workflows/github.com/aofarrel/dockstore-workflow-md5sum-unified https://dockstore.org/workflows/github.com/aofarrel/fastqc-wdl/fastqc https://dockstore.org/workflows/github.com/aofarrel/goleft-wdl/covstats https://dockstore.org/workflows/github.com/aofarrel/goleft-wdl/covstats_and_indexcov https://dockstore.org/workflows/github.com/aofarrel/goleft-wdl/covstats_and_indexcov_wdl_checker https://dockstore.org/workflows/github.com/aofarrel/goleft-wdl/indexcov https://dockstore.org/workflows/github.com/aofarrel/mask-by-coverage https://dockstore.org/workflows/github.com/aofarrel/minos_WDL/minos_adjudicate https://dockstore.org/workflows/github.com/aofarrel/myco/myco_raw https://dockstore.org/workflows/github.com/aofarrel/myco/myco_simple https://dockstore.org/workflows/github.com/aofarrel/myco/myco_sra https://dockstore.org/workflows/github.com/aofarrel/samtools-index-WDL/samtools_index https://dockstore.org/workflows/github.com/aofarrel/simutartor/simutartor https://dockstore.org/workflows/github.com/aofarrel/tb_profiler/tbprofiler_bam https://dockstore.org/workflows/github.com/aofarrel/tb_profiler/tbprofiler_fastq https://dockstore.org/workflows/github.com/aofarrel/tree_nine/matUtils_extract https://dockstore.org/workflows/github.com/aofarrel/tree_nine/tree_nine https://dockstore.org/workflows/github.com/aofarrel/upon-thine-inputs/upon-thine-inputs https://dockstore.org/workflows/github.com/aofarrel/vcfhunk https://dockstore.org/workflows/github.com/arosato87/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/arvados/bh20-seq-resource/Pangenome Generator https://dockstore.org/workflows/github.com/aryeelab/bisulfite-seq-tools/aggregate_bismark https://dockstore.org/workflows/github.com/aryeelab/bisulfite-seq-tools/bismark https://dockstore.org/workflows/github.com/aryeelab/cas-designer/cas-designer https://dockstore.org/workflows/github.com/aryeelab/encode-chip-seq-pipeline2/CHIP-seq https://dockstore.org/workflows/github.com/aryeelab/encode-hic-pipeline/hic-pipeline https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/BamToBigWig https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/Megalodon https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/Nanohime https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/bamtobedwithcoverage https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/demux https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/dorado_basecall https://dockstore.org/workflows/github.com/aryeelab/nanopore-tools/nanopolish https://dockstore.org/workflows/github.com/aryeelab/nanopore_tools/combine_sample_sheets https://dockstore.org/workflows/github.com/aryeelab/nanopore_tools/preprocess_flowcell https://dockstore.org/workflows/github.com/aryeelab/oneseq https://dockstore.org/workflows/github.com/aryeelab/oneseq/_wdl_checker https://dockstore.org/workflows/github.com/aryeelab/topology-tools/chunk_pe_fastq https://dockstore.org/workflows/github.com/aryeelab/topology-tools/chunk_se_fastq https://dockstore.org/workflows/github.com/aryeelab/topology-tools/download_url_to_file https://dockstore.org/workflows/github.com/aryeelab/topology-tools/preprocess_microc https://dockstore.org/workflows/github.com/aryeelab/topology-tools/preprocess_rcmc https://dockstore.org/workflows/github.com/aryeelab/topology-tools/se_to_pe_fastq https://dockstore.org/workflows/github.com/aryeelab/topology_tools/preprocess_hic https://dockstore.org/workflows/github.com/astrovsky01/ASHG_Galaxy_Workflows/ASHG_Plink_association_testing_and_plotting https://dockstore.org/workflows/github.com/astrovsky01/ASHG_Galaxy_Workflows/ASHG_Plink_filtering_part_1 https://dockstore.org/workflows/github.com/astrovsky01/ASHG_Galaxy_Workflows/ASHG_Plink_filtering_part_2_and_stratification https://dockstore.org/workflows/github.com/astrovsky01/ASHG_Galaxy_Workflows/ASHG_Plink_sex_and_phenotype_assignment https://dockstore.org/workflows/github.com/atgenomix/seqslab-workflows/WGS-Germline-Snps-Indels https://dockstore.org/workflows/github.com/avani-k/dummy-repo https://dockstore.org/workflows/github.com/bactopia/bactopia-wdl/Bactopia https://dockstore.org/workflows/github.com/bactopia/bactopia-wdl/BactopiaDatasets https://dockstore.org/workflows/github.com/bactopia/bactopia-wdl/BactopiaSearch https://dockstore.org/workflows/github.com/bactopia/bactopia-wdl/BactopiaTools https://dockstore.org/workflows/github.com/bass-cigass/hmmIBD/HMMIBD https://dockstore.org/workflows/github.com/bass-cigass/hmmIBD/HMMIBD_01_CLEAN_VCF https://dockstore.org/workflows/github.com/bass-cigass/hmmIBD/HMMIBD_CHOSE_MONOGENOMIC https://dockstore.org/workflows/github.com/bass-cigass/hmmIBD/HMMIBD_CLEAN_VCF https://dockstore.org/workflows/github.com/bass-cigass/hmmIBD/HMMIBD_OUTPUTS_VISUALIZATION https://dockstore.org/workflows/github.com/bcbio/bcbio_validation_workflows https://dockstore.org/workflows/github.com/bcbio/bcbio_validation_workflows/wes-agha-test-arvados https://dockstore.org/workflows/github.com/bcbio/bcbio_validation_workflows/wes-agha-test-arvados_cwl_checker https://dockstore.org/workflows/github.com/bcbio/bcbio_validation_workflows/wes-agha-test-gcp https://dockstore.org/workflows/github.com/bcbio/bcbio_validation_workflows/wes-agha-test-gcp_cwl_checker https://dockstore.org/workflows/github.com/beneopp/warp_bam_realignment/ExomeGermlineSingleSample https://dockstore.org/workflows/github.com/berebolledo/wdl-bootcamp https://dockstore.org/workflows/github.com/beroukhim-lab/gatk4-data-processing/processing-for-variant-discovery-gatk4 https://dockstore.org/workflows/github.com/bespin-workflows/exomeseq-gatk4 https://dockstore.org/workflows/github.com/bethana1987/ismb2024 https://dockstore.org/workflows/github.com/bgpalmer/WGSConcord/PfComputeDepthOfCoverage https://dockstore.org/workflows/github.com/bharatij/GangSTRPipeline-wdl https://dockstore.org/workflows/github.com/bharatij/GangSTRPipeline-wdl/GangSTRSexChrPipeline https://dockstore.org/workflows/github.com/bharatij/STRetchPipeline-wdl https://dockstore.org/workflows/github.com/bharatij/STRetchPipeline-wdl/EstimateSTROutlier https://dockstore.org/workflows/github.com/bharatij/STRetchPipeline-wdl/STRetchRealignSTRCounts https://dockstore.org/workflows/github.com/bioinfqh/dis_prs_ancestry https://dockstore.org/workflows/github.com/bioinfqh/dis_prs_ancestry_test_2 https://dockstore.org/workflows/github.com/biomonika/HPP/assessT2Tcompletness https://dockstore.org/workflows/github.com/biomonika/HPP/estimateTelomericLengths https://dockstore.org/workflows/github.com/biomonika/HPP/estimateTelomericLengthsLargeBam https://dockstore.org/workflows/github.com/biomonika/HPP/evaluateHumanAssembly https://dockstore.org/workflows/github.com/biomonika/HPP/findAssemblyBreakpoints https://dockstore.org/workflows/github.com/biomonika/HPP/longestReadsUpToCoverage https://dockstore.org/workflows/github.com/blostein/agd_ancestry/ancestry_pipeline https://dockstore.org/workflows/github.com/blostein/agd_merge_tgp/agd_combine_TGP https://dockstore.org/workflows/github.com/blostein/agd_pca_wdl/agd_pca_project https://dockstore.org/workflows/github.com/blostein/agd_scope_ancestry_wdl/agd_scope_ancestry https://dockstore.org/workflows/github.com/blostein/tgp_calculate_freq/tgp_calculate_within_frqs https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-alignment-class https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-alignment-class-2 https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-md5sum https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-md5sum-072023 https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-md5sum-tester https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-md5sum-tester/_cwl_checker https://dockstore.org/workflows/github.com/briandoconnor/dockstore-workflow-md5sum/dockstore-wdl-workflow-md5sum https://dockstore.org/workflows/github.com/briandoconnor/plenary-resources-2020 https://dockstore.org/workflows/github.com/briansha/Annovar_Whitelist_Filter_WDL https://dockstore.org/workflows/github.com/briansha/Regenie_WDL/regenie https://dockstore.org/workflows/github.com/briansha/Regenie_WDL/regenie_alternate https://dockstore.org/workflows/github.com/broadinstitute/CDS-long-read-workflows/LongRNAqcPlusFromBAM https://dockstore.org/workflows/github.com/broadinstitute/CNV-Mag/CNV-Mag https://dockstore.org/workflows/github.com/broadinstitute/CRISPRi-pipeline/CRISPRi_pipeline https://dockstore.org/workflows/github.com/broadinstitute/CellBender https://dockstore.org/workflows/github.com/broadinstitute/CytominerSqliteMaxColUp/NewCytominer https://dockstore.org/workflows/github.com/broadinstitute/DSP_User_Ed/CalculateClassGPA https://dockstore.org/workflows/github.com/broadinstitute/DSP_User_Ed/CalculateStudentGPA https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/cell_classification https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/cell_selection https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/dropseq_cbrb https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/manual_cell_selection_dropulation https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/optimus_auto_cell_selection https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/optimus_auto_dropulation https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/optimus_cbrb https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/optimus_dropulation https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/optimus_post_processing https://dockstore.org/workflows/github.com/broadinstitute/Drop-seq-wdl/standard_analysis https://dockstore.org/workflows/github.com/broadinstitute/GATK-For-Primates https://dockstore.org/workflows/github.com/broadinstitute/GATK-for-Microbes/MicrobialConcordancePipeline https://dockstore.org/workflows/github.com/broadinstitute/GATK-for-Microbes/MicrobialGenomePipeline https://dockstore.org/workflows/github.com/broadinstitute/ID_Sandbox/SLF-main-pipeline https://dockstore.org/workflows/github.com/broadinstitute/ID_Sandbox/slf-compscreen https://dockstore.org/workflows/github.com/broadinstitute/ID_Sandbox/slf-subset https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/BamToFastq https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/Duplex_read_finder https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/IsoQuantMakeDB https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/IsoQuantQuantify https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/LongRNAqcFromBAM https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/LongRNAqcPlotting https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/LongRNAqcPlusFromBAM https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/LongRNAqc_readAccuracyAnalyzer https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/Minimap2_LR https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/Sqanti3FromBAM https://dockstore.org/workflows/github.com/broadinstitute/MDL-workflows/StringTieMerge https://dockstore.org/workflows/github.com/broadinstitute/PRINT_pipeline https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/01B_sorting https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/01_PTAAlignmentWorkflow_decontamination https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/01_alignment_bwa https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/01_mapping_bwa https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/01_mapping_bwa_mem2 https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/02_PTA_Variant_Caling https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/02_mark_duplicates_pta https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/03_PTA_Variant_Filtering https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/03_Realignment_pta https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/04_gatk_haplotype_caller_pta https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/05_gatk_variant_filtration_pta https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/CollectWGSMetrics_PTA https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/CreateBwaMem2Index https://dockstore.org/workflows/github.com/broadinstitute/PTA_Analysis/extract_read_group https://dockstore.org/workflows/github.com/broadinstitute/ParallelDonorAssignment/cisvar https://dockstore.org/workflows/github.com/broadinstitute/ParallelDonorAssignment/donor_assign https://dockstore.org/workflows/github.com/broadinstitute/T2T-ACE/T2T-ACE https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/AlignmentBasedCNVEvaluation https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/AnnotateBed_hg19 https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/AnnotateBed_hg38 https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/BenchmarkCNV https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/BreaKmer https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/BroadInternalRNAWithUMIs https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CNV-Profiler https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CNV_BLAST https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CallabilityAnalysis https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/Cleanup_Failed_Submissions https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/Clinical_CNV_Eval https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CollectSamErrorMetrics https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CoverageAnalysis https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CoverageProfiler https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CramToBam https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/CrosscheckFingerprints https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/DownsampleBam https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/DownsampleSam https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/GATK4_CNV https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/GDCWholeGenomeSomaticSingleSample https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/GenerateDuplexConsensusBams https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/Griffin_GC_Correction https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/Griffin_Nucleosome_Profiling https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/MakeCallsFromConsensus https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/MergeBamAlignment https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/MergeVCF https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/NeoVax_Analysis https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/NeoVax_PackageData https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/PeddyAnalysis https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/QUICviz https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/RevertBamAndBwaAln https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/SelectSampleFromCallSet https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/SingleSampleCODEC https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/SmartSeq2_SC_Plate_QC https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/SmartSeq2_scRNA_pipeline https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/SomaticSV_SvABA https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/TAG_Mop https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/TruvariBench https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/checkBaitSetName https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/checkBaitSetName_dev https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/cnvArrayProber https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/codec_bcl2fastq https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/demux_CODEC https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/griffin_ER_classifier https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/iChorCNA_hg19 https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/iChorCNA_hg38 https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/iChorCNA_step2 https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/lego_plotter https://dockstore.org/workflows/github.com/broadinstitute/TAG-public/mutect2-gatk4 https://dockstore.org/workflows/github.com/broadinstitute/TerraWorkflows/GWAS-Regenie https://dockstore.org/workflows/github.com/broadinstitute/accessibility_peak_gene_predictor/peak_gene_predictor https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-cut-n-run/Cut-and-Run https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-cut-n-run/Cut-and-Run-qc https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-repeats-analysis/Align-quantify-repeats https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-repeats-analysis/Align-quantify-repeats-chromatin https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-repeats-analysis/Align-quantify-repeats-scatter https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-repeats-analysis/STAR-build-index https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/BedGraphToBigWig https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/BigWigAverageOverBed https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/Bwtool https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/Bwtool_matrix https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/Deeptools https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/Deeptools-bamCoverage https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/Deeptools-computeMatrix https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/DropulationAssignDonors https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/FeatureCounts https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/IgvtoolsCount https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/IterPBS https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/PicardMergeBams https://dockstore.org/workflows/github.com/broadinstitute/broad-epi-workflows-collection/STAR https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cellprofiler https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cp_illumination_pipeline https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cpd_analysis_pipeline https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cpd_max_projection_pipeline https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/create_load_data https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cytomining https://dockstore.org/workflows/github.com/broadinstitute/cellprofiler-on-Terra/cytomining_jumpcp https://dockstore.org/workflows/github.com/broadinstitute/celseq2-wdl/celseq2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/Aggregate_CN_seg_files https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/AnnotSV https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/BamToUnmappedRGBams_noHardClips https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/CramToBam https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/IsoQuantQuantify https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/Manta_SomaticSV https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/Manta_SomaticSV_v1_0 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/PureCN https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/RNA_aggregate https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/RNA_pipeline https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/RNA_stranded_rsem_rnaseqc2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_aggregate https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_cram_qc https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_pipeline https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_pipeline_22Q2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_preprocessing https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/WGS_preprocessing_DRAGEN_24Q2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/aggregate_microsatellite_repeats https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/annotate_variants https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/bcftools_setGT https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/cnn-variant-filter https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/cnv_somatic_pair_workflow https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/dev-hgvs https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/filter_to_maf https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/filter_to_maf.wdl https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/fix_mutect2_clust https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/fix_mutect2_clust.wdl https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/fix_mutect2col https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/generateIndexFiles https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/gridss2_make_pon https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/gridss2_workflow https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/guide_mutation_binary_24q2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/hgvs https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/longReadMapper https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/manta_annot https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/mask_variants https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/merge_and_upload https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/merge_and_upload.wdl https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/msisensor2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/omics_mutect2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/omics_post_mutect2 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/opencravat https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/opencravat_dm https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rna_index https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rna_mutation https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rna_seq_strand https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rna_strand https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rnaseq_mutect2_tumor_only https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rsem_aggregate_results https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/rsem_depmap https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/star_for_fusion https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/star_wdl1-0 https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/stringtie_workflow https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/svannotate https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/telomere https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/vcf2maf https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/vcf_to_depmap https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/vep_sv https://dockstore.org/workflows/github.com/broadinstitute/depmap_omics/wgs_qc https://dockstore.org/workflows/github.com/broadinstitute/dockstore-tool-cosi2 https://dockstore.org/workflows/github.com/broadinstitute/eQTL_annotations/annotate_eqtl_variants https://dockstore.org/workflows/github.com/broadinstitute/ega_submissions/egaFileTransfer https://dockstore.org/workflows/github.com/broadinstitute/ega_submissions/registerEGADataset https://dockstore.org/workflows/github.com/broadinstitute/ega_submissions/registerEGAExperimentAndRunProvisionalStudyID https://dockstore.org/workflows/github.com/broadinstitute/ega_submissions/registerEGAExperimentAndRuns https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics-atac-archr https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics-merge-data https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics-peak-to-gene https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics-rna-seurat https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/Combinomics-sample-demultiplexing https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/SHARE-seq https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/SHARE-seq-atac-archr https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/SHARE-seq-cell-annotation https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/SHARE-seq-rna-seurat https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/SHARE-seq-sample-demultiplexing https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/bowtie2 https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/correct-fastqs https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/dorcs-find-dorcs https://dockstore.org/workflows/github.com/broadinstitute/epi-SHARE-seq-pipeline/merge-data https://dockstore.org/workflows/github.com/broadinstitute/epi-diffbind https://dockstore.org/workflows/github.com/broadinstitute/epi-lims-workflows/CNV https://dockstore.org/workflows/github.com/broadinstitute/epi-lims-workflows/ChIP-seq https://dockstore.org/workflows/github.com/broadinstitute/epi-lims-workflows/ChIP-seq-import https://dockstore.org/workflows/github.com/broadinstitute/epi-lims-workflows/SHARE-seq-import https://dockstore.org/workflows/github.com/broadinstitute/epi-lims-workflows/terra-upsert https://dockstore.org/workflows/github.com/broadinstitute/eqtl_mvSuSiE/eqtl_mvSuSiE https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/QTL-mapping https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/test-cbc-modify https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/test-peer-selection https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/variant-annotation https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/village-mashr-preprocess https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/village-sc-eQTL-pt1 https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/village-sc-eQTL-pt2 https://dockstore.org/workflows/github.com/broadinstitute/eqtl_pipeline_terra/village-sceQTL https://dockstore.org/workflows/github.com/broadinstitute/gatk-evaluation/multi_cnv_validation https://dockstore.org/workflows/github.com/broadinstitute/gatk-evaluation/purity_cnv_validation https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/01-GatherSampleEvidence https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/02-EvidenceQC https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/03-TrainGCNV https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/04-0-1-BAFFromShardedVCF https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/04-1-1-BAFFromGVCFs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/04-1-BAFFromShardedVCF https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/04-GatherBatchEvidence https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/05-ClusterBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/06-GenerateBatchMetrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07-FilterBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07-FilterBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07a-FilterBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07b-PlotSVCountsPerSample https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07c-FilterBatchSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/08-MergeBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/08-PlotSVCountsPerSample https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09-FilterBatchSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09-GenotypeBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09c_ManualReviewAndNCRPatch_ManualReview https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09c_ReviseVcfWithCpxManualResultsOnly https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/10-MergeBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/10-RegenotypeCNVs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/11-GenotypeBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/11-MakeCohortVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/12-AnnotateVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/12-RegenotypeCNVs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/13-CombineBatches https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/14-ResolveComplexVariants https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/15-GenotypeComplexVariants https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/16-CleanVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/17-MainVcfQc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/17-MasterVcfQc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/18-AnnotateVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContext https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContextSharded https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContext_xz_fixes_4 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicDisorderRegions https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateVcfAF https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyManualVariantFilter https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyManualVariantFilterPerContig https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyNCRAndRefArtifactFilters https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplySRFlagsHotfix https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BAFFromShardedVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BatchEffectAcrossContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BenchmarkGqFilter https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BoostModel https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalcuFstPopFromSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalcuNcasStat https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFst https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstLargeVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstLargeVcfWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstWholeGenomeAou https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateGeneInterruptionPerGenome https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateSaturationStat https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CleanVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CleanVcfChromosome https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ClusterBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ClusterTloc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CollectSampleQcMetrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CombineBatches https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CombineVcfsForMakeGq https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CompareSVCallsets https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatTextFiles https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatVcfContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatVcfs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CrossValidateGqRecalibrator https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/DetectBatchEffectsStep1 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/DetectBatchEffectsStep2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/EnforceMinNoCallRate https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/EvidenceQC https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExaminePEMetricsForCPX_xz https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractFiltersFromVcfs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractVariantsInGeneList https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractVcfSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchQc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterComplexAcrossContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterGenotypes https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterGenotypesSharded https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamplesFinal https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamplesWithPreprocessing https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterRecalibratedVcf https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterUnassignedSexGenotypes https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FormatVcfForGatk https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FormatVcfForGatkScattered https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part1-CollectData https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part2-TrainModel https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part3-ApplyModel https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GatherBatchEvidence https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GatherSampleEvidence https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenerateBatchMetrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeBatch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeComplexVariants https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeGenomicDisorderRegions https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GetVariantListsFromVaporAndIRSReports https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GetVcfStats https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/IGVSingleGenomeScatter https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/JoinRawCalls https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/LongReadVsShortRead https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MELT https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MW_BatchEvidenceMerging https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MainVcfQc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeBincovMatrix https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeGqRecalibratorTrainingSetFromPacBio https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeTarVall https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualCnvRevision https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualCnvRevisionAcrossContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualReview https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Manual_Review https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManuallyReviewBalancedSVs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MergeBatchSites https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MergeMEIAlts https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Minimap https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module03Qc https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07FilterCleanupQualRecalibration https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07MinGQ https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07XfBatchEffect https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07XfBatchEffect_no_pairwise https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Mosaic https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Mosaic_SV_discovery https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/NCAS https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRClustering https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRClustering_OldVersion https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRPreprocessing https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PlotSVCountsPerSample https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PreprocessVcfForMakeGq https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PreprocessVcfForVapor https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RdTestMultiBatches https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RdTestMultiBatchesWrapper https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReAnnotateVcfForRelease4_1 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfAcrossGenomicContext_xz_fixes_4 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfAcrossSVTYPE_xz_fixes_4 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfSVsUnit https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfWholeGenome_xz_fixe_4 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RecalibrateGq https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RefineComplexVariants https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RefinePacbioTruthset https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RegenotypeCNVs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RemoveAnnotationsAcrossContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RemoveINSChr2End2Fields_pre_reclustering https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RenameVcfSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReshardVcf_test_sz https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ResolveComplexVariants https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RevertLargeMEDeletions https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVCallsetComparisonbyContig https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordance https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordancePacBio https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordanceScattered https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordanceSimple https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordance_mw_sv_concordance_opt_updated_2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConstraint https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SanitizeHeader https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ShardedCluster_xz_fixes_4 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SingleSamplePipelinePart2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesList https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesScattered https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TabixRdMetrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TinyResolve https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TrainGCNV https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VaPoR https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Vapor https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VaporAndIRSSupportReport https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VcfToBedAcrossContigs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VisualizeCnvs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/expansionhunter_v5_128gb https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/expansionhunter_v5_64gb https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/gatk-sv-single-sample https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/gatk-sv-str https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/igv-trio-plots-all-samples https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/merge-cohort-vcfs https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00a https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00a-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00b https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00c https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00c-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module01 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module01-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module02 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module02-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module03 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module03-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04b https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module0506 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module0506-metrics https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module08-annotation https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_128g_v1_2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_64gb_v2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer_v2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer_v3 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_v1_2 https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/sz_test_genotype_batch https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/train-gCNV https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/vcf2bed https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ApplyBQSR https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ApplyBQSRAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/BaseRecalibrator https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/BaseRecalibratorAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ClipReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ClipReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CollectReadCounts https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CollectReadCountsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CombineGVCFs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CombineGVCFsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountBases https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountBasesAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FixMisencodedBaseQualityReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FixMisencodedBaseQualityReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FlagStat https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FlagStatAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/GatherTranches https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/GatherTranchesAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/LeftAlignIndels https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/LeftAlignIndelsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/PrintReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/PrintReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ReadAnonymizer https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ReadAnonymizerAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/RevertBaseQualityScores https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/RevertBaseQualityScoresAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitNCigarReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitNCigarReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitReads https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitReadsAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/UnmarkDuplicates https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/UnmarkDuplicatesAllArgs https://dockstore.org/workflows/github.com/broadinstitute/gatk/ComparePgenAndVcfScatter https://dockstore.org/workflows/github.com/broadinstitute/gatk/Funcotator https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsAssignIds https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBenchmarkExtractTask https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBeta https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBulkIngestGenomes https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCalculatePrecisionAndSensitivity https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCallsetCost https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCallsetStatistics https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateFilterSet https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateTables https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVAT https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATAnnotations https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATFilesFromBigQuery https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATfromVDS https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVDS https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractAvroFilesForHail https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallset https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgen https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgenMerged https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgenMerged_ACAF https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallset_ACAF https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCohortFromSampleNames https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsImportGenomes https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsIngestTieout https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsJointVariantCalling https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsJointVariantCallsetCost https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsParallelIntegrationTest https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPopulateAltAllele https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPrepareBulkImport https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPrepareRangesCallset https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsQuickstartHailIntegration https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsQuickstartIntegration https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsQuickstartVcfIntegration https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsRescatterCallsetInterval https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsSnapshotRun https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsValidateVDS https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsValidateVat https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsWithdrawSamples https://dockstore.org/workflows/github.com/broadinstitute/gatk/MergePgen https://dockstore.org/workflows/github.com/broadinstitute/gatk/MergePgenHierarchicalWdl https://dockstore.org/workflows/github.com/broadinstitute/gatk/MitochondriaPipeline https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_calling_and_merge_for_fabric https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_case_filter_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_case_scattered_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_case_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_cohort_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_combined_exome_cohort_jointcall_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_joint_call_exomes https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_somatic_pair_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_somatic_panel_workflow https://dockstore.org/workflows/github.com/broadinstitute/gatk/cram2filtered https://dockstore.org/workflows/github.com/broadinstitute/gatk/cram2model https://dockstore.org/workflows/github.com/broadinstitute/gatk/mutect2 https://dockstore.org/workflows/github.com/broadinstitute/gatk/mutect2_pon https://dockstore.org/workflows/github.com/broadinstitute/gatk/pathseq_pipeline https://dockstore.org/workflows/github.com/broadinstitute/gatk/run_happy https://dockstore.org/workflows/github.com/broadinstitute/genomestrip-terra/gs_analyze_C4AB_batch https://dockstore.org/workflows/github.com/broadinstitute/genomestrip-terra/gs_preprocess https://dockstore.org/workflows/github.com/broadinstitute/gpp-rnaseq-analysis/RNA_aggregate https://dockstore.org/workflows/github.com/broadinstitute/gpp-rnaseq-analysis/RNA_pipeline https://dockstore.org/workflows/github.com/broadinstitute/gpp-rnaseq-analysis/rsem_depmap https://dockstore.org/workflows/github.com/broadinstitute/hgrm_multiome_cluster_processing/multiome_cluster_processing https://dockstore.org/workflows/github.com/broadinstitute/hgrm_train_chrombpnet/train_chrombpnet https://dockstore.org/workflows/github.com/broadinstitute/hidive/AlignPacbioBam https://dockstore.org/workflows/github.com/broadinstitute/hidive/HLAassociation https://dockstore.org/workflows/github.com/broadinstitute/hidive/HidiveCluster https://dockstore.org/workflows/github.com/broadinstitute/hidive/HidiveCohort https://dockstore.org/workflows/github.com/broadinstitute/hidive/HidiveSample https://dockstore.org/workflows/github.com/broadinstitute/horsefish https://dockstore.org/workflows/github.com/broadinstitute/horsefish/compress_gcs_objects https://dockstore.org/workflows/github.com/broadinstitute/horsefish/create_fofn https://dockstore.org/workflows/github.com/broadinstitute/horsefish/create_md5 https://dockstore.org/workflows/github.com/broadinstitute/horsefish/create_object_md5 https://dockstore.org/workflows/github.com/broadinstitute/horsefish/deliver_prs_to_anvil https://dockstore.org/workflows/github.com/broadinstitute/horsefish/ingest_dragen_data_to_tdr https://dockstore.org/workflows/github.com/broadinstitute/horsefish/migrate_bucket_data_via_local https://dockstore.org/workflows/github.com/broadinstitute/horsefish/monitor_submission https://dockstore.org/workflows/github.com/broadinstitute/horsefish/parse_dragen_metrics https://dockstore.org/workflows/github.com/broadinstitute/horsefish/reheader_cram https://dockstore.org/workflows/github.com/broadinstitute/horsefish/run_shell_script https://dockstore.org/workflows/github.com/broadinstitute/horsefish/sam_demo https://dockstore.org/workflows/github.com/broadinstitute/horsefish/samtools_split https://dockstore.org/workflows/github.com/broadinstitute/horsefish/simulations_demo https://dockstore.org/workflows/github.com/broadinstitute/horsefish/start_dragen https://dockstore.org/workflows/github.com/broadinstitute/horsefish/validate_cram_file https://dockstore.org/workflows/github.com/broadinstitute/horsefish/validate_sam_file https://dockstore.org/workflows/github.com/broadinstitute/igvf-atomic-workflows/IGVF-single_cell_pipeline https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/bulk_demux https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/bulk_longread_demux https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/masseq_main https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/merge_main https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/pbskera_main https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/sc_isoseq_groupdedup https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/sc_kinnex_lima_plus_isoseq https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/00_BarcodeExtractor https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AlignAssemblies https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AlignedBamQCandMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AlignedMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AnnotateVCFInsRM https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AnnotateVariantContext https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AsmEvaluationDipcall https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BackupWorkspace https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BandagePlotGraph https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BenchmarkVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BionanoAssemble https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BroadOnPremMalariaAlignmentAndVariantCalling https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BuildPGGBPangenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BuildTempLocalFpStore https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallSniffles https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallStructuralVariantsFromLongreads https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallTranslocator https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallVariantsReadBased https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CleanupIntermediate https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Clipper https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectBamFlagStats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageAtSampleLevel https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageOverBed https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageOverRegion https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectSingleSampleSVvcfMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CompareVcfBenchmarks https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CompressLongreadsBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ComputePerBaseDepth https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ComputeReadLengths https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToHailMT https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToHailMTT2T https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToZarrStore https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CountSingleSampleSVs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CountTheBeans https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBed https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsFlowcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsOneUnit https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsPerBase https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverWGS https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageStats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeduplicateAndResetONTAlignedBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeduplicateONTBamAndPepperIt https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeepSomatic https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromFTP https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromHudsonAlpha https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromSRA https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromWeb https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Dummy https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DummyAlignmentFlagMetricsCollector https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DystPeaker https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ECIdentity https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/EstimateLrSamplePloidy https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExpandedDrugResistanceMarkerAggregation https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExpandedDrugResistanceMarkerExtraction https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractAouData https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractCoverageStats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractReadsByName https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractRegionsFromBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FASTQstats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FASTQstatsFromBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FemaleXYDV https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterAnnotateVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterBamByLength https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterChromosomalFeatures https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterVcfHybridPhasing https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FindBamIdentity https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Flare https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/GenerateMalariaReport https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastQ https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastqSimple https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastqSimpleImproved https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiCNV https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiTRGT https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiUstats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiUstatsDemuxed https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiasmFullLengthContig https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiasmOnDiploid https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiphaseJointCall https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiphaseJointCallTRGT https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariantHyphase https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariantMargin https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariants https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenomeHiphase https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenomeMargin https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HyphaseSingleSample https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_Screenshot https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_improved https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_more_inputs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumAssembleWithMcCortex https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumAssembleWithSPAdes https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumErrorCorrectBayesHammer https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumFastP https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumPlasmidSPAdes https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumTrimReads https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IndexAndFinalizeVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IndexVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishKmerCounting https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishKmerCountingPerSample https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishMergingKmerCount https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointLocalAsmAnchorGraph https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointLocalAsmAnchorGraph1 https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointVCFSmallVariantsBasicMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRCNVs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRConvertBCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRJointCallGVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRJointCallGVCFsWithGenomicsDB https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRMergeSVVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRProcessIntervalsForCnv https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRStatisticallyPhaseVariants https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRVisualizeVariants https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyCanu https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyHifiasm https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyHifiasmTrio https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalFast5Subset https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalJointAssembly https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LongReadsContaminationEstimation https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LongphaseSingleSample https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MASisoseqSample https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MOBsuiteRecon https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MakeIGVScreenPNGs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MapAssemblyContigs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeFastqs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeHiFiFastQs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergePhasedVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeSampleBamsAndCollectMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergedAssemblyCanu https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Minimap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MitoHifiLocalAssembly https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Modbam2bed https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/NormalizeVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONT10x https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTAssembleWithCanu https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTAssembleWithFlye https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTBamCheckBeforeIngestion https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTBasecall https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcellFromMultipleBasecalls https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcellWGSuBAM https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTMethylation https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTPfHrp2Hrp3Status https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTPfTypeDrugResistanceMarkers https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTProcessBasecall https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTQCReport https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTTelomereBasecaller https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTWholeGenomePlasmid https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PALMER https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqArraySingleFlowcellv5 https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqCorrectUMIs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqSingleFlowcellv4 https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBAssembleWithHifiasm https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCS https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCS10x https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDVOnInterval https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDemultiplex https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDemultiplexWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSFlowcellFastqs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSIsoSeq https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSNoSharding https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCLRDemultiplexWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCLRWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFindAndSummarizeBAMs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFlowcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFlowcellWinnowmap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBIndex https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBMASIsoSeqDemultiplex https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBMASIsoSeqQuantify https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBNonBarcodedWGSSMRTcellPostprocess https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBNonBarcodedWGSSMRTcellPreprocess https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBUnbarcodedSMRTcellAlign https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBUnbarcodedSMRTcellPreprocess https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PaftoolAsmVariants https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PanelProcessMalariaBarcodesForRh https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Paraphase https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PbCpG https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumDrugResistanceSummary https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumHrp2Hrp3Status https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumPolygenomicityBarcodeEstimate https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumTypeDrugResistanceMarkers https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhaseBams https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhaseMergedSNVVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhasingStatistics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PlotResource https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PostprocessCCSedDemultiplexedSMRTCell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreProcessRevioSMRTcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PrepareReferenceMap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreprocessBarcodedCCSedSMRTCell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreprocessDemultiplexedCCSedSMRTCell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessMalariaBarcodesDemo https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessOnInstrumentDemuxedChunk https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessOnInstrumentDemuxedChunkRefFree https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessRevioSMRTcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/QuastEval https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ReadManifestTableHiphase https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ReadManifestTableStatistical https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RemoveDuplicateFromMergedONTBamAndSplitByReadgroup https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RemoveRedundantReblocksInGVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RepairBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ResetSampleNameInBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ResetSampleNameInSingleSampleVcf https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RunPanaroo https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRBamToFq https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRDownsampleBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRFlowcell https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRFlowcellDecontaminate https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRIndexBam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBBootstrap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VETS https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRReblockGVCFs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenomeBootstrap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome_Pf_Niare_VETS https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome_Pf_Niare_VQSR https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SVAnnotate https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SexCheckNaive https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit4PhaseWholeGenome https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit5 https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit5Switch https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SingleSampleStats https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SmallVariantsBasicMetrics https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SmallVariantsSmellTest https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Sniffles2JointCallSV https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SortHugegVCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Spade_assembly https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitCohortBAMsAndVCFsForPhasing https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitMergedBamByReadGroup https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitMergedPacBioBamByReadgroup https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeGCNV https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeHiFiCNV https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeSmallVariants https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SupplementMOBsuiteDB https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SvQCPlots https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/TTMarsEvaluateSVs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_DVP_phasing https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_Index_RAW_CCS_BAMs https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_Phase_CCS_DVP_VCF https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_haplotag_ccs_bam https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/TestNewPBAlign https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/UpdatePlasmidDB https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VariantStatsOverRegion https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyBamFingerprint https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyFingerprint https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyFingerprintCCSSample https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/WhatshapPhasing https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/WinMap2 https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Winnowmap https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/count_records https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/sz_test_RemoveSingleOrganismContamination https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/test_ShortReadsContaminationEstimation https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/xTea https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/BatchSplitCohortVcf https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/ChromosomePhasedPanelCreationFromHiPhase https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/ConcatAndEvaluate https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/FixVariantCollisions https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/GLIMPSEBatchedCasePerChromosome https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/HierarchicalMergeVCFs https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/HierarchicallyMergeVcfs https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/InputPhasedPanelEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGECasePerChromosome https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPanelWithPreprocessing https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSEBatchedCase https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSEBatchedCasePerChromosome https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSECase https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/LeaveOneOutEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/LeaveOutEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/MergePerChrBcftools https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PanGenieCase https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PanGeniePanelCreation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluationFromHiPhase https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluationWithoutFixVariantCollisionsForPanel https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalAndStatisticalPhasing https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasing https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasingShortTRGT https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasingTRGT https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasing_Subset https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/SplitCohortVcf https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/TRGTMerge https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/VcfdistAndOverlapMetricsEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/VcfdistEvaluation https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/hybridphasing https://dockstore.org/workflows/github.com/broadinstitute/malaria/AmpSeq https://dockstore.org/workflows/github.com/broadinstitute/malaria/MHap https://dockstore.org/workflows/github.com/broadinstitute/mcl_imput/Imputation https://dockstore.org/workflows/github.com/broadinstitute/mcl_imput/ImputationBeagle https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/AzDatasetToGcp https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CopyDataset https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CopyGcpToGcp https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CreateWorkspaceFileManifest https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/DeleteBadStateFilesFromDataset https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/DeleteTdrRows https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ExportDataFromDatasetToOutputBucket https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ExportDataFromSnapshotToOutputBucket https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GenerateTdrSchemaJson https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GetAndDeleteOrphanedFilesFromDataset https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GetGcpFileMd5 https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/HardCloneWithExternalBucket https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/HardCloneWorkspace https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ReUploadGcpObjectWithMd5 https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/RenameAndReingestFiles https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/RenameColumnsAndFilesInDataset https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/SetUpStagingWorkspaceAndDataset https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TdrSummaryStatistics https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TerraSummaryStatistics https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TerraWorkspaceTableToTDRIngest https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/UploadMetricsAndGcpFilesToTerra https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Admixture https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/AggregatePRSResults https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BGEEstimateSex https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Bambu https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkAndCompareVCFs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkSVs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkVCFs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkVCFsWithoutMatch https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CKDRiskAdjustment https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetrics https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetricsCohort https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetricsCohortScattered https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectMetrics https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CompareBenchmarks https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CompareSamplesWithoutTruth https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CreateIGVSession https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CrosscheckFingerprints https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Cupcake https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DebugGlimpseCalling https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DownsampleAndCollectCoverage https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DuplexSequencingGenerateTruth https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/EMSeq https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/EndToEndPipeline https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesAndBenchmark https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesAndSimpleBenchmark_beta https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesToCompare https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Flair https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Flames https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FullImputationPRSValidation https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FunctionalEquivalence https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GenerateDuplexConsensusBams https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GetCramHeader https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse1Imputation https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2CheckQC https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2Imputation https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationAndCheckQC https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationInBatches https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationQC https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2MergeBatches https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2SplitReference https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseCheckpointTest https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseConcordance https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseReferencePanelDev https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ImputationWorkflow https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoQuant https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoSeq https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoformDiscoveryBenchmark https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ListMaleAndFemaleSamples https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MergeSingleSampleMinimacVcfs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationBenchmark https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationBenchmarkReference https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationSupplementary https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationSupplementarySet https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MicrobialRNATagSeq https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MultiProjectOntoPCs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PCARE https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PCAREAndQC https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRSQC https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRSWrapper https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRScoringWorkflow https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PerformPopulationPCA https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PopulationPCAFromImputedCohort https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PrepareWGSForValidation https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ProGRESSMultivariateRiskModel https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ProjectOntoPCs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/QcSVs https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAAoUMetrics https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAMetrics https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAWithUMIsPipeline https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ReduceAndMergeForGlimpse https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ReduceAndMergeForGlimpseByInterval https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/SampleSetPRSWrapper https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/SimpleBenchmark https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/StringTie https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Talon https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/TrainAncestryAdjustmentModel https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ValidateImputation https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ValidateScoring https://dockstore.org/workflows/github.com/broadinstitute/pangenome-pipelines/MinigraphWGA https://dockstore.org/workflows/github.com/broadinstitute/pangenome-pipelines/Minimap2RefIndex https://dockstore.org/workflows/github.com/broadinstitute/pangenome-pipelines/Minimap2WGA https://dockstore.org/workflows/github.com/broadinstitute/pav-wdl/pav https://dockstore.org/workflows/github.com/broadinstitute/pbs-analysis https://dockstore.org/workflows/github.com/broadinstitute/rna_seq_sars_cov_2/ctat_mutations https://dockstore.org/workflows/github.com/broadinstitute/rna_seq_sars_cov_2/cumulus https://dockstore.org/workflows/github.com/broadinstitute/rna_seq_sars_cov_2/rna_seq_covid_create_reference https://dockstore.org/workflows/github.com/broadinstitute/rna_seq_sars_cov_2/rna_seq_sars_cov_2 https://dockstore.org/workflows/github.com/broadinstitute/rna_seq_sars_cov_2/trinityrnaseq https://dockstore.org/workflows/github.com/broadinstitute/sldsc-eqtls/calculate_ldscores https://dockstore.org/workflows/github.com/broadinstitute/sldsc-eqtls/regression https://dockstore.org/workflows/github.com/broadinstitute/sldsc-eqtls/sldsc https://dockstore.org/workflows/github.com/broadinstitute/snp_str_qc https://dockstore.org/workflows/github.com/broadinstitute/snp_str_qc/fingerprint_sample https://dockstore.org/workflows/github.com/broadinstitute/stp_segmentation_wdl https://dockstore.org/workflows/github.com/broadinstitute/stp_space_ranger https://dockstore.org/workflows/github.com/broadinstitute/submissions/deleteFromGDC https://dockstore.org/workflows/github.com/broadinstitute/submissions/transferToDbgap https://dockstore.org/workflows/github.com/broadinstitute/submissions/transferToGDC https://dockstore.org/workflows/github.com/broadinstitute/submissions/validateDbGapStatus https://dockstore.org/workflows/github.com/broadinstitute/submissions/validateGDCStatus https://dockstore.org/workflows/github.com/broadinstitute/villages-sqtl-pipeline/village-sc-sQTLs https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/align_and_count https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/align_and_count_multiple_report https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/align_and_plot https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/amplicon16S_analysis https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_denovo https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_refbased https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/assemble_refbased_single https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_export_only https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_assemblies https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_beast_mcc https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_mltree https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_msa https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_msa_with_subsampler https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/augur_from_newick https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/bams_multiqc https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/beast_gpu https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/blastoff https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/calc_bam_read_depths https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/chunk_blast https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/classify_kraken2 https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/classify_krakenuniq https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/classify_multi https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/classify_qiime2_multi https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/classify_single https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/contigs https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/coverage_table https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/create_enterics_qc_viz https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/create_enterics_qc_viz_general https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/demux_deplete https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/demux_metadata_only https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/demux_only https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/demux_plus https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/deplete_only https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/detect_cross_contamination https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/detect_cross_contamination_precalled_vcfs https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/diff_genome_sets https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/downsample https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/dump_gcloud_env_info https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fastq_to_ubam https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fetch_annotations https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fetch_fasta_for_genbank_accessions https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fetch_multiple_sra_to_bams https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fetch_sra_bams_for_genbank_accession https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/fetch_sra_to_bam https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/filter_classified_bam_to_taxa https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/filter_sequences https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/genbank_curate https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/genbank_gather https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/genbank_single https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/isnvs_lofreq https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/isnvs_merge_to_vcf https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/isnvs_one_sample https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/kraken2_build https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/mafft https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/mafft_and_snp https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/mafft_and_trim https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/megablast_to_lca https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/merge_bams https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/merge_metagenomics https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/merge_tar_chunks https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/merge_vcfs https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/merge_vcfs_and_annotate https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/metagenomic_denovo https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/multiqc_only https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/nextclade_single https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/populate_library_and_sample_tables_from_flowcell https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/qiime_import_bam https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/reconstruct_from_alignments https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_batch_relineage https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_biosample_load https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_data_release https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_genbank https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_genbank_ingest https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_gisaid_ingest https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_illumina_full https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_lineages https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_nextclade_multi https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_nextstrain https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_nextstrain_aligned_input https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_sequencing_reports https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_sra_to_genbank https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/scaffold_and_refine https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/scaffold_and_refine_multitaxa https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/subsample_by_metadata https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/subsample_by_metadata_with_focal https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/subsampler https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/taxid_to_nextclade https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/terra_table_to_tsv https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/terra_tsv_to_table https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/terra_update_assemblies https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/train_16S_classifier https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/trimal https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/unpack_archive_to_bucket https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/update_data_tables https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/workflow_launcher_sarscov2_illumina_full https://dockstore.org/workflows/github.com/broadinstitute/warp/Arrays https://dockstore.org/workflows/github.com/broadinstitute/warp/Arrays_TDR https://dockstore.org/workflows/github.com/broadinstitute/warp/BamToCram https://dockstore.org/workflows/github.com/broadinstitute/warp/BroadInternalRNAWithUMIs https://dockstore.org/workflows/github.com/broadinstitute/warp/BroadInternalRNAWithUMIsPipeline https://dockstore.org/workflows/github.com/broadinstitute/warp/BroadInternalUltimaGenomics https://dockstore.org/workflows/github.com/broadinstitute/warp/BuildIndices https://dockstore.org/workflows/github.com/broadinstitute/warp/CEMBA https://dockstore.org/workflows/github.com/broadinstitute/warp/CramToBam https://dockstore.org/workflows/github.com/broadinstitute/warp/CramToUnmappedBams https://dockstore.org/workflows/github.com/broadinstitute/warp/CreateAdapterMetadata https://dockstore.org/workflows/github.com/broadinstitute/warp/CreateImputationRefPanelBeagle https://dockstore.org/workflows/github.com/broadinstitute/warp/CreateOptimusAdapterMetadata https://dockstore.org/workflows/github.com/broadinstitute/warp/CreateSS2AdapterMetadata https://dockstore.org/workflows/github.com/broadinstitute/warp/CreateSs2AdapterMetadata https://dockstore.org/workflows/github.com/broadinstitute/warp/ExomeGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/ExomeReprocessing https://dockstore.org/workflows/github.com/broadinstitute/warp/GDCWholeGenomeSomaticSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/IlluminaGenotypingArray https://dockstore.org/workflows/github.com/broadinstitute/warp/Imputation https://dockstore.org/workflows/github.com/broadinstitute/warp/ImputationBeagle https://dockstore.org/workflows/github.com/broadinstitute/warp/ImputationBeaglePreChunk https://dockstore.org/workflows/github.com/broadinstitute/warp/Imputation_TDR https://dockstore.org/workflows/github.com/broadinstitute/warp/Imputation_Wide_TDR https://dockstore.org/workflows/github.com/broadinstitute/warp/InferReference https://dockstore.org/workflows/github.com/broadinstitute/warp/JointGenotyping https://dockstore.org/workflows/github.com/broadinstitute/warp/LiftoverVcfs https://dockstore.org/workflows/github.com/broadinstitute/warp/MultiSampleArrays https://dockstore.org/workflows/github.com/broadinstitute/warp/Multiome https://dockstore.org/workflows/github.com/broadinstitute/warp/Optimus https://dockstore.org/workflows/github.com/broadinstitute/warp/OptimusHcaAdapter https://dockstore.org/workflows/github.com/broadinstitute/warp/OptimusPostProcessing https://dockstore.org/workflows/github.com/broadinstitute/warp/OptimusTestHcaAdapter https://dockstore.org/workflows/github.com/broadinstitute/warp/PCA https://dockstore.org/workflows/github.com/broadinstitute/warp/PairedTag https://dockstore.org/workflows/github.com/broadinstitute/warp/RNAWithUMIsPipeline https://dockstore.org/workflows/github.com/broadinstitute/warp/RNAWithUMIsPipeline-warp https://dockstore.org/workflows/github.com/broadinstitute/warp/ReblockGVCF https://dockstore.org/workflows/github.com/broadinstitute/warp/RefactoredOptimusTest https://dockstore.org/workflows/github.com/broadinstitute/warp/RefactoredSs2Test https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideSeq https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideTag https://dockstore.org/workflows/github.com/broadinstitute/warp/SlideTags https://dockstore.org/workflows/github.com/broadinstitute/warp/Smartseq2_Multisample https://dockstore.org/workflows/github.com/broadinstitute/warp/Smartseq2_Single_Nucleus_Multisample https://dockstore.org/workflows/github.com/broadinstitute/warp/Smartseq2_Single_Sample https://dockstore.org/workflows/github.com/broadinstitute/warp/Ss2HcaAdapter https://dockstore.org/workflows/github.com/broadinstitute/warp/TestATAC https://dockstore.org/workflows/github.com/broadinstitute/warp/TestCramToUnmappedBams https://dockstore.org/workflows/github.com/broadinstitute/warp/TestExomeGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/TestExomeReprocessing https://dockstore.org/workflows/github.com/broadinstitute/warp/TestIlluminaGenotypingArray https://dockstore.org/workflows/github.com/broadinstitute/warp/TestImputation https://dockstore.org/workflows/github.com/broadinstitute/warp/TestImputationBeagle https://dockstore.org/workflows/github.com/broadinstitute/warp/TestJointGenotyping https://dockstore.org/workflows/github.com/broadinstitute/warp/TestMultiSampleSmartSeq2SingleNucleus https://dockstore.org/workflows/github.com/broadinstitute/warp/TestMultiome https://dockstore.org/workflows/github.com/broadinstitute/warp/TestOptimus https://dockstore.org/workflows/github.com/broadinstitute/warp/TestPairedTag https://dockstore.org/workflows/github.com/broadinstitute/warp/TestRNAWithUMIsPipeline https://dockstore.org/workflows/github.com/broadinstitute/warp/TestReblockGVCF https://dockstore.org/workflows/github.com/broadinstitute/warp/TestSlideSeq https://dockstore.org/workflows/github.com/broadinstitute/warp/TestUltimaGenomicsJointGenotyping https://dockstore.org/workflows/github.com/broadinstitute/warp/TestUltimaGenomicsWholeGenomeCramOnly https://dockstore.org/workflows/github.com/broadinstitute/warp/TestUltimaGenomicsWholeGenomeGermline https://dockstore.org/workflows/github.com/broadinstitute/warp/TestVariantCalling https://dockstore.org/workflows/github.com/broadinstitute/warp/TestWholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/TestWholeGenomeReprocessing https://dockstore.org/workflows/github.com/broadinstitute/warp/Testsnm3C https://dockstore.org/workflows/github.com/broadinstitute/warp/TimingTest https://dockstore.org/workflows/github.com/broadinstitute/warp/UGWholeGenomeGermline https://dockstore.org/workflows/github.com/broadinstitute/warp/UltimaGenomicsJointGenotyping https://dockstore.org/workflows/github.com/broadinstitute/warp/UltimaGenomicsWholeGenomeCramOnly https://dockstore.org/workflows/github.com/broadinstitute/warp/UltimaGenomicsWholeGenomeGermline https://dockstore.org/workflows/github.com/broadinstitute/warp/VariantCalling https://dockstore.org/workflows/github.com/broadinstitute/warp/VerifyGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/broadinstitute/warp/WholeGenomeReprocessing https://dockstore.org/workflows/github.com/broadinstitute/warp/atac https://dockstore.org/workflows/github.com/broadinstitute/warp/optimus_test_hca_adapter https://dockstore.org/workflows/github.com/broadinstitute/warp/scATAC https://dockstore.org/workflows/github.com/broadinstitute/warp/scATAC-Multiome https://dockstore.org/workflows/github.com/broadinstitute/warp/snM3C https://dockstore.org/workflows/github.com/broadinstitute/warp/snm3C-seq https://dockstore.org/workflows/github.com/broadinstitute/wdl-for-dockstore/Mutect2-Test-2 https://dockstore.org/workflows/github.com/broadinstitute/wdl-for-dockstore/struct-test https://dockstore.org/workflows/github.com/brwnj/covviz https://dockstore.org/workflows/github.com/brwnj/gtex-gcs-workaround https://dockstore.org/workflows/github.com/brwnj/smoove-wdl/smoove-wdl https://dockstore.org/workflows/github.com/brwnj/somalier-wdl https://dockstore.org/workflows/github.com/buutrg/PRSmix_wdl/PRSmix https://dockstore.org/workflows/github.com/bwh-bioinformatics-hub/CircRNA-Mapping https://dockstore.org/workflows/github.com/c-BIG/NPM-sample-qc/NPM-sample-qc https://dockstore.org/workflows/github.com/c3g/dnaseq https://dockstore.org/workflows/github.com/cademirch/rle-analysis-wdl https://dockstore.org/workflows/github.com/cancerit/dockstore-cgp-irap/_cwl_checker https://dockstore.org/workflows/github.com/cancerit/dockstore-cgpmap/_cwl_checker https://dockstore.org/workflows/github.com/cancerit/dockstore-cgpmap/cgpmap-bamCsiOut_cwl_checker https://dockstore.org/workflows/github.com/cancerit/dockstore-cgpmap/cgpmap-bamOut_cwl_checker https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_for_a_corrupted_fastq_file https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_for_a_corrupted_xam_file https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_for_corrupted_fastq_files https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_seqval_wf_interleaved_fq https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_seqval_wf_paired_fq https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/chksum_xam_to_interleaved_fq https://dockstore.org/workflows/github.com/cancerit/workflow-seq-import/validate_interleaved_fq https://dockstore.org/workflows/github.com/cauwerx/ASC_WGS_training/FilterVcf https://dockstore.org/workflows/github.com/charliecondon/Annovar_Whitelist_Filter_WDL https://dockstore.org/workflows/github.com/charliecondon/Annovar_Whitelist_Filter_WDL/_wdl_checker https://dockstore.org/workflows/github.com/chienchi/dockstore-edge-covid19 https://dockstore.org/workflows/github.com/chienchi/dockstore-edge-covid19/_wdl_checker https://dockstore.org/workflows/github.com/chienchi/dockstore-edge-covid19/edge-covid19-sra https://dockstore.org/workflows/github.com/chunjie-sam-liu/qc-wdl https://dockstore.org/workflows/github.com/chunjie-sam-liu/rmats-turbo-nf https://dockstore.org/workflows/github.com/chunjie-sam-liu/rmats-turbo-wdl https://dockstore.org/workflows/github.com/chunjie-sam-liu/rmats-turbo-wdl/_wdl_checker https://dockstore.org/workflows/github.com/chunjie-sam-liu/rna-seq-quant-wdl https://dockstore.org/workflows/github.com/chunjie-sam-liu/stringtie-wdl https://dockstore.org/workflows/github.com/clara-parabricks-workflows/All-of-Us-Long-Read-Workflows/AllOfUs-LongRead-ONT-Alignment https://dockstore.org/workflows/github.com/clara-parabricks-workflows/All-of-Us-Long-Read-Workflows/AllOfUs-LongRead-ONT-BaseCalling https://dockstore.org/workflows/github.com/clara-parabricks-workflows/All-of-Us-Long-Read-Workflows/AllOfUs-LongRead-ONT-PhaseBam https://dockstore.org/workflows/github.com/clara-parabricks-workflows/All-of-Us-Long-Read-Workflows/AllOfUs-LongRead-ONT-VariantCalling https://dockstore.org/workflows/github.com/clara-parabricks-workflows/All-of-Us-ONT-Workflows/AllOfUs-LongRead-ONT-Alignment https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-bam2fq2bam https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-build-reference-indices https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-create-PON https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-deepvariant-retraining https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-fq2bam https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-germline-calling https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-somatic-calling https://dockstore.org/workflows/github.com/clara-parabricks-workflows/parabricks-wdl/clara-parabricks-trio-de-novo https://dockstore.org/workflows/github.com/cmanigbas/wdl-bootcamp-23june29 https://dockstore.org/workflows/github.com/cmarkello/Sandbox https://dockstore.org/workflows/github.com/cmarkello/Sandbox/vus-cooccurrence https://dockstore.org/workflows/github.com/cmarkello/bmtb_wdl/bmtb https://dockstore.org/workflows/github.com/cmloreth/pathogen-genomics/Genbank_curate https://dockstore.org/workflows/github.com/common-workflow-library/bio-cwl-tools/prefetch_fastq https://dockstore.org/workflows/github.com/cwhelan/TAG-public/codec_bcl2fastq https://dockstore.org/workflows/github.com/cwhelan/mocha/Eagle https://dockstore.org/workflows/github.com/cwhelan/mocha/Gtc2Vcf https://dockstore.org/workflows/github.com/cwhelan/mocha/Idat2Gtc https://dockstore.org/workflows/github.com/cwhelan/mocha/Mocha https://dockstore.org/workflows/github.com/cwhelan/variant-interpretation/RelatednessCfDNA https://dockstore.org/workflows/github.com/cwhelan/variant-interpretation/vepAnnotateHailNIFS https://dockstore.org/workflows/github.com/cwhelan/variant-interpretation/vepAnnotateSingle https://dockstore.org/workflows/github.com/cwhelan/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/cwl-apps/predixcan_tools/predictdb https://dockstore.org/workflows/github.com/cwl-apps/predixcan_tools/predixcan https://dockstore.org/workflows/github.com/danilo-dcs/eLwazi-containers-and-workflows/feature_counts_wdl https://dockstore.org/workflows/github.com/data-metrics/sha256/wdl https://dockstore.org/workflows/github.com/david4096/autopotato-attack/autopotato-attack https://dockstore.org/workflows/github.com/david4096/ismb2024 https://dockstore.org/workflows/github.com/david4096/ismb2024/galaxy_test https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp-jun24 https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp-jun24/changed https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp-jun24/submodule https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp-june https://dockstore.org/workflows/github.com/david4096/wdl-bootcamp-may https://dockstore.org/workflows/github.com/deepakri201/TotalSegmentatorConvertToDICOM/TotalSegmentatorConvertToDICOMWorkflow https://dockstore.org/workflows/github.com/deflaux/cellprofiler-on-Terra/cytomining https://dockstore.org/workflows/github.com/deflaux/embedder https://dockstore.org/workflows/github.com/denis-yuen/dockstore-whalesay https://dockstore.org/workflows/github.com/denis-yuen/galaxy-workflow-dockstore-example-1 https://dockstore.org/workflows/github.com/denis-yuen/galaxy-workflow-dockstore-example-2 https://dockstore.org/workflows/github.com/denis-yuen/rnaseq https://dockstore.org/workflows/github.com/denis-yuen/test-workflows-and-tools https://dockstore.org/workflows/github.com/denis-yuen/test-workflows-and-tools/funky--workflow https://dockstore.org/workflows/github.com/dhglabgenetics/ExomeGermlineSingleSample/ExomeGermlineSingleSample https://dockstore.org/workflows/github.com/dhglabgenetics/warp/VariantCalling https://dockstore.org/workflows/github.com/dockstore-personal-testing/gatk4-exome-analysis-pipeline-flat https://dockstore.org/workflows/github.com/dockstore-testing/Metaphlan-ISBCGC https://dockstore.org/workflows/github.com/dockstore-testing/Metaphlan-WDL https://dockstore.org/workflows/github.com/dockstore-testing/dockstore-whalesay2 https://dockstore.org/workflows/github.com/dockstore-testing/dockstore-workflow-md5sum-unified/cwl_checker https://dockstore.org/workflows/github.com/dockstore-testing/dockstore-workflow-md5sum-unified/wdl https://dockstore.org/workflows/github.com/dockstore-testing/dockstore-workflow-md5sum-unified/wdl_checker https://dockstore.org/workflows/github.com/dockstore-testing/dockstore-workflow-md5sum-unified/wdl_wdl_checker https://dockstore.org/workflows/github.com/dockstore-testing/example_cwl_workflow https://dockstore.org/workflows/github.com/dockstore-testing/galaxy-workflow-dockstore-example-2 https://dockstore.org/workflows/github.com/dockstore-testing/md5sum-checker https://dockstore.org/workflows/github.com/dockstore-testing/md5sum-checker/_cwl_checker https://dockstore.org/workflows/github.com/dockstore-testing/md5sum-checker/wdl https://dockstore.org/workflows/github.com/dockstore-testing/md5sum-checker/wdl_wdl_checker https://dockstore.org/workflows/github.com/dockstore-testing/multi-step-cwl https://dockstore.org/workflows/github.com/dockstore-testing/one-workflow-many-ways https://dockstore.org/workflows/github.com/dockstore-testing/one-workflow-many-ways/wdl https://dockstore.org/workflows/github.com/dockstore-testing/test_repo/_cwl_checker https://dockstore.org/workflows/github.com/dockstore-testing/tooltester-wes-testing/manyJobs https://dockstore.org/workflows/github.com/dockstore-testing/tooltester-wes-testing/nontrivial https://dockstore.org/workflows/github.com/dockstore-testing/tooltester-wes-testing/words https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/agc-fastq-read-counts https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/agc-hello-world https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/agc-hello-world-input https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/multi-descriptor-no-input https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/single-descriptor-complex-nested-input https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/single-descriptor-nested-input https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/single-descriptor-no-input https://dockstore.org/workflows/github.com/dockstore-testing/wes-testing/single-descriptor-with-input https://dockstore.org/workflows/github.com/dockstore/bcc2020-training/HelloWorld https://dockstore.org/workflows/github.com/dockstore/dockstore-tool-bamstats/nfl https://dockstore.org/workflows/github.com/dockstore/dockstore-tool-bamstats/wdl https://dockstore.org/workflows/github.com/donghyuka/warp/Arrays https://dockstore.org/workflows/github.com/donghyuka/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/duct317/Wgs_test/WGS-Test-Duc https://dockstore.org/workflows/github.com/dyeramosu/BasicWDLs/mimosca-wdl https://dockstore.org/workflows/github.com/dyeramosu/BasicWDLs/mimosca_statsmodels-wdl https://dockstore.org/workflows/github.com/dyeramosu/BasicWDLs/permute_mimosca_v2-wdl https://dockstore.org/workflows/github.com/dyeramosu/BasicWDLs/similarity_matrix-wdl https://dockstore.org/workflows/github.com/dyeramosu/scenic_plus_workflow/downstream_scenic_analysis-wdl https://dockstore.org/workflows/github.com/dyeramosu/scenic_plus_workflow/geneactivityscores-wdl https://dockstore.org/workflows/github.com/dyeramosu/scenic_plus_workflow/pycistarget-wdl https://dockstore.org/workflows/github.com/dyeramosu/scenic_plus_workflow/pycistopic-wdl https://dockstore.org/workflows/github.com/dyeramosu/scenic_plus_workflow/scenicplus-wdl https://dockstore.org/workflows/github.com/eduff/wdl-scflow https://dockstore.org/workflows/github.com/ehclark/wdl-pipeline-test/DockstoreVersionTesting https://dockstore.org/workflows/github.com/ehclark/wdl-pipeline-test/RuntimeOptionsTestWorkflow https://dockstore.org/workflows/github.com/ekiernan/feb_1_practice/WDL-101 https://dockstore.org/workflows/github.com/ekiernan/feb_2_practice/WDL-101-test https://dockstore.org/workflows/github.com/ekiernan/feb_9_practice/WDL-101-BAM https://dockstore.org/workflows/github.com/ekiernan/jan_24_practice/WDL-101-bam https://dockstore.org/workflows/github.com/ekiernan/practice_wdl/hello https://dockstore.org/workflows/github.com/ellisdoro/BioHackathonFiles2024/pangenome_cactus https://dockstore.org/workflows/github.com/elwazi/fedimpute https://dockstore.org/workflows/github.com/emilymliau/annotations-dev/addFiltertoVCF https://dockstore.org/workflows/github.com/emilymliau/annotations-dev/ancestry-inference-hail-dev https://dockstore.org/workflows/github.com/emilymliau/el-annotations/MTtoVCF https://dockstore.org/workflows/github.com/emilymliau/el-annotations/addDPtoVCF https://dockstore.org/workflows/github.com/emilymliau/el-annotations/exportMTtoVCF https://dockstore.org/workflows/github.com/emilymliau/el-annotations/vepAnnotateHailExtraMT https://dockstore.org/workflows/github.com/emilymliau/el-annotations/vepAnnotateHailMT_new_output_vcf https://dockstore.org/workflows/github.com/emilymliau/el-gatk-sv/EL-FilterGenotypes https://dockstore.org/workflows/github.com/emilymliau/variant-interpretation-dev/wgs-denovo-step-01-dev https://dockstore.org/workflows/github.com/emmarogge/terra-dockstore-test-workflow https://dockstore.org/workflows/github.com/epiercehoffman/gatk-sv-terra-eph/batch-combine-pre-0506 https://dockstore.org/workflows/github.com/epiercehoffman/gatk-sv-terra-eph/batch-combine-pre-merge https://dockstore.org/workflows/github.com/ericsong/dockstore-test https://dockstore.org/workflows/github.com/erikwolfsohn/gisaid-cli/Update_GISAID_ID_Terra_Table https://dockstore.org/workflows/github.com/erikwolfsohn/gisaid-cli/gisaid_cli3 https://dockstore.org/workflows/github.com/erikwolfsohn/gisaid-cli/gisaid_covCLI https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/CCPHL_NARMS_Table https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/NARMS_Batch https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/NARMS_Prep https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/NARMS_prep_mincoverage_test https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/TheiaProk_Illumina_PE_Kaptive2 https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bacterial_genomics/TheiaProk_Illumina_SE https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bioinformatics/TheiaProk_Illumina_PE_PHB_fastp_file_output https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_bioinformatics/covCLI_test_mercury_prep_batch https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_viral_genomics/covCLI_mercury_SE_prep https://dockstore.org/workflows/github.com/erikwolfsohn/public_health_viral_genomics/covCLI_mercury_batch2 https://dockstore.org/workflows/github.com/erikwolfsohn/terra_utilities/SRA_Fetch https://dockstore.org/workflows/github.com/erikwolfsohn/wdl_workflows/NCBI_PGAP https://dockstore.org/workflows/github.com/erikwolfsohn/wdl_workflows/breseq https://dockstore.org/workflows/github.com/erikwolfsohn/wdl_workflows/seqsender_repository_submission https://dockstore.org/workflows/github.com/erikwolfsohn/wdl_workflows/seqsender_submission_prep https://dockstore.org/workflows/github.com/erikwolfsohn/wdl_workflows/update_looker_dashboard https://dockstore.org/workflows/github.com/erinyoung/roundabout https://dockstore.org/workflows/github.com/evalkanas/count_variant_occurrence/ev-cohort-af https://dockstore.org/workflows/github.com/evalkanas/gatk/Mutect2_4-4-0-0 https://dockstore.org/workflows/github.com/evalkanas/gatk/Mutect2_PON_4-4-0-0 https://dockstore.org/workflows/github.com/evalkanas/learn_wdl/CollectWgsMetrics https://dockstore.org/workflows/github.com/evalkanas/mosaics/Concat_Sites https://dockstore.org/workflows/github.com/evalkanas/mosaics/anno-rm-gc https://dockstore.org/workflows/github.com/evalkanas/mosaics/annotate_vcf https://dockstore.org/workflows/github.com/evalkanas/mosaics/filter_variants https://dockstore.org/workflows/github.com/evalkanas/mosaics/get-rm https://dockstore.org/workflows/github.com/evalkanas/mosaics/index_vcf https://dockstore.org/workflows/github.com/evalkanas/mosaics/variant-qc https://dockstore.org/workflows/github.com/f73chen/InsertSizeMetrics/InsertSizeMetrics https://dockstore.org/workflows/github.com/f73chen/MuTect2GATK4/MuTect2 https://dockstore.org/workflows/github.com/f73chen/callability/Callability https://dockstore.org/workflows/github.com/f73chen/delly/Delly https://dockstore.org/workflows/github.com/f73chen/fastqc https://dockstore.org/workflows/github.com/f73chen/gatk-haloptype-caller/HaplotypeCaller https://dockstore.org/workflows/github.com/f73chen/rnaSeqQC/RNASeqQC https://dockstore.org/workflows/github.com/f73chen/rsem/RSEM https://dockstore.org/workflows/github.com/f73chen/star/Star https://dockstore.org/workflows/github.com/f73chen/starfusion/StarFusion https://dockstore.org/workflows/github.com/f73chen/variantEffectPredictor/VariantEffectPredictor https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/AddTruvariAnnotations https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/AlignONT https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/AnnotateJointVcf https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/AouVsHPRC https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMerge https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeDipcall https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeDipcallAll https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeDipcallSimple https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeIntrasample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeIntrasampleBND https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeNoDuplicates https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsMergeTRGT https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/BcftoolsView https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/ConcatenateChromosomes https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/Dipcall2SVs https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/FilterAndSplit https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/FilterIntrasampleDevV11 https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedTruePositives https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcf https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfCutesv https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfKanpig https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfKanpigMerged https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfKanpigMergedV11 https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfKanpigV11 https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfLrcaller https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfSniffles https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/GetRegenotypedVcfSvjedigraph https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/HGSVC2Align https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/HGSVC2Align2 https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/HGSVC2Download https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/HGSVC2DownloadAssemblies https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/HPRCDownloadClones https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/Hapdiff https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/ILPCompression https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/Jasmine https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/JasmineIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/MergeRegenotypedIntersampleVcf https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/MergeSVsSNPs https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/PAV2SVs https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/PbsvIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/ROC https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/RemoveSamplesV11 https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/RepeatAnnotation https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/SVMerger https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/SVMergerIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/SnifflesIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/Subsample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/Svimmer https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/SvimmerIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/SvpopIntra https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/TestILPCompression https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/ToBed https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/TruvariCollapse https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/TruvariIntersample https://dockstore.org/workflows/github.com/fabio-cunial/callset_integration/TruvariIntrasampleFabio https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeDipcall https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeIntersample https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeIntrasample https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeNoDuplicates https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeSvSnp https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BcftoolsMergeSvTrgt https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/BedtoolsMergeDipcall https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Cutesv https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Debreak https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/FilterDipcall https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Hifiasm https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Jasmine https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/JasmineIntersample1 https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/JasminePrime https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/MapCCS https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Nanovar https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Panpop https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Pbsv https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/PbsvIntersample https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Resolve https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/ResolvePav https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/SVision https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Sawfish https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Sniffles https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/SnifflesIntersample https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Subsample https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Svim https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Trgt https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/TrgtMerge https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/Truvari https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/VcfdistEvaluation https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/clean_vcf https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/fill_vcf_ref_alleles_from_fasta https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/pav https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/subset_csv_samples_using_vcf https://dockstore.org/workflows/github.com/fabio-cunial/hapestry_experiments/subset_n_samples_from_vcf https://dockstore.org/workflows/github.com/fabio-cunial/infogain/PerformanceMatrices https://dockstore.org/workflows/github.com/fabio-cunial/infogain/SVRecall https://dockstore.org/workflows/github.com/fabio-cunial/infogain/SplitReads https://dockstore.org/workflows/github.com/fabio-cunial/kanpig_experiments/SnifflesSingleSample https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/BAMtracks https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/JediGraph https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/LocalAssembly https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/Regenotype https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/Standardize https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/Sv2Igv https://dockstore.org/workflows/github.com/fabio-cunial/lr-genotyping/Trgt https://dockstore.org/workflows/github.com/fabio-cunial/palantir-workflows/PerformPopulationPCA https://dockstore.org/workflows/github.com/fabio-cunial/palantir-workflows/ScoringImputedDataset https://dockstore.org/workflows/github.com/fabio-cunial/palantir-workflows/TrainAncestryAdjustmentModel https://dockstore.org/workflows/github.com/fabio-cunial/palantir-workflows/UpdateVariantIdsFabio https://dockstore.org/workflows/github.com/fabio-cunial/pav-wdl/AssemblyBased https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/AnnotateVCFs https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/CallRealTrios https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/JointCalling https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/PerformanceMatrices https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/ReadLengthDistribution https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/SimulateHaplotypes https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosCoverageEffect https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosCoverageEffectPerformanceMatrices https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosCreateSVLengthHistograms https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosCreateTruthVCFs https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosCreateTruthVCFs2 https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosDeleteLargeFiles https://dockstore.org/workflows/github.com/fabio-cunial/population-sv-simulator/TriosPerformanceMatrices https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/GetVCFs https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/JointCalling https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/MergeVCFs https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/OverlapGraph https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/OverlapStats https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/PBAssembleWithHifiasm https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/PhasedMerge https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/TruvariBenchSample https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/TruvariIntrasample https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/VgIndex https://dockstore.org/workflows/github.com/fabio-cunial/sv-merging/VisualizeSVs https://dockstore.org/workflows/github.com/fhdsl/AnVIL_WDLs/fastq_subsample https://dockstore.org/workflows/github.com/fhembroff/TEST-workflow/words https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/agc-fastq-read-counts https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/agc-hello-world https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/agc-hello-world-input https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/multi-descriptor-no-input https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/single-descriptor-complex-nested-input https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/single-descriptor-nested-input https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/single-descriptor-no-input https://dockstore.org/workflows/github.com/fhembroff/dockstore-wes-documentation-fork/single-descriptor-with-input https://dockstore.org/workflows/github.com/frankp-0/GAUDI_workflow/run_gaudi https://dockstore.org/workflows/github.com/g3chen/WGSMetrics/WGSMetrics https://dockstore.org/workflows/github.com/g3chen/bam-merge-preprocessing/BamMergePreprocessing https://dockstore.org/workflows/github.com/g3chen/bamQC/BamQC https://dockstore.org/workflows/github.com/g3chen/bcl2fastq/Bcl2Fastq https://dockstore.org/workflows/github.com/g3chen/bwa/BwaMem https://dockstore.org/workflows/github.com/g3chen/sequenza/Sequenza https://dockstore.org/workflows/github.com/ga4gh-tech-team/wdl-hello-world/wdlHelloWorld https://dockstore.org/workflows/github.com/galaxyproject/training-material/de-novo https://dockstore.org/workflows/github.com/galaxyproject/training-material/dip https://dockstore.org/workflows/github.com/galaxyproject/training-material/genome-annotation https://dockstore.org/workflows/github.com/galaxyproject/training-material/intro-everyone https://dockstore.org/workflows/github.com/galaxyproject/training-material/intro-short https://dockstore.org/workflows/github.com/garyluu/example_cwl_workflow https://dockstore.org/workflows/github.com/garyluu/one-workflow-many-ways https://dockstore.org/workflows/github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/JointGenotypingWf https://dockstore.org/workflows/github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/PairedEndSingleSampleWf https://dockstore.org/workflows/github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/PairedEndSingleSampleWf-Firecloud-B37 https://dockstore.org/workflows/github.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/PairedEndSingleSampleWf-Firecloud-HG38 https://dockstore.org/workflows/github.com/gatk-workflows/five-dollar-genome-analysis-pipeline/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/gatk-workflows/five-dollar-genome-analysis-pipeline/germline_single_sample_workflow https://dockstore.org/workflows/github.com/gatk-workflows/gatk3-4-rnaseq-germline-snps-indels/rna-germline-variant-calling https://dockstore.org/workflows/github.com/gatk-workflows/gatk3-data-processing https://dockstore.org/workflows/github.com/gatk-workflows/gatk3-germline-snps-indels https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-basic-joint-genotyping https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-basic-variant-validation https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-basic-variant-validation/gatk4-basic-variant-validation https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-data-processing/processing-for-variant-discovery-gatk4 https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-exome-analysis-pipeline/ExomeGermlineSingleSample https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-genome-processing-pipeline/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-germline-snps-indels/JointGenotyping https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-germline-snps-indels/haplotypecaller-gvcf-gatk4 https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-germline-snps-indels/joint-discovery-gatk4 https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels https://dockstore.org/workflows/github.com/gatk-workflows/gatk4-somatic-snvs-indels/mutect2-normal-normal https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-conversion/BAM-to-Unmapped-BAM https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-conversion/CRAM-to-BAM https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-conversion/Paired-FASTQ-to-Unmapped-BAM https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-conversion/Paired-Fastq-to-Unmapped-BAM-FC https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-conversion/interleaved-fastq-to-paired-fastq https://dockstore.org/workflows/github.com/gatk-workflows/seq-format-validation/Validate-BAM https://dockstore.org/workflows/github.com/gatk-workflows/somatic-snvs-indels/gatk4-somatic-snvs-indels-discovery https://dockstore.org/workflows/github.com/gatk-workflows/utility-wdls/copy-files-to-gs-directory https://dockstore.org/workflows/github.com/gatk-workflows/utility-wdls/generate-sample-map https://dockstore.org/workflows/github.com/gatk-workflows/utility-wdls/make-fofn https://dockstore.org/workflows/github.com/genome/dockstore-workflow-index-reference https://dockstore.org/workflows/github.com/genome/hic-pipeline/hic-pipeline https://dockstore.org/workflows/github.com/genome/qc-analysis-pipeline https://dockstore.org/workflows/github.com/genome/qc-analysis-pipeline/PreindexedRxIdentifier https://dockstore.org/workflows/github.com/genome/qc-analysis-pipeline/RxIdentifier https://dockstore.org/workflows/github.com/genome/qc-analysis-pipeline/bam-indexer https://dockstore.org/workflows/github.com/genome/qc-metric-aggregator https://dockstore.org/workflows/github.com/gglab21/bismark_terra/bismark_terra https://dockstore.org/workflows/github.com/gglab21/sc_cellranger/10x_cellranger_aggregate https://dockstore.org/workflows/github.com/gglab21/sc_cellranger/10x_cellranger_count https://dockstore.org/workflows/github.com/gglab21/sc_cellranger/create_sc_sample_map https://dockstore.org/workflows/github.com/gks-anvil/vrs-annotator/VRSAnnotator https://dockstore.org/workflows/github.com/grahamlbanes/terra-scripts/FinalBQSR https://dockstore.org/workflows/github.com/grahamlbanes/terra-scripts/RepeatHC https://dockstore.org/workflows/github.com/grahamlbanes/terra-scripts/RepeatHCIndex https://dockstore.org/workflows/github.com/grbot/cram-qc https://dockstore.org/workflows/github.com/grbot/flagstat https://dockstore.org/workflows/github.com/grbot/hello-world https://dockstore.org/workflows/github.com/grbot/multiqc https://dockstore.org/workflows/github.com/griffithlab/analysis-wdls/immuno https://dockstore.org/workflows/github.com/gulhanlab/GTEx-RNAseq-pipeline https://dockstore.org/workflows/github.com/gulhanlab/WES_MuTect2_pipeline https://dockstore.org/workflows/github.com/gulhanlab/bwaMem_pipeline https://dockstore.org/workflows/github.com/h3abionet/TADA https://dockstore.org/workflows/github.com/h3abionet/h3agatk https://dockstore.org/workflows/github.com/hacchy1983/depmap_omics_RSEM_aggregate https://dockstore.org/workflows/github.com/hacchy1983/rna-seq-pipeline https://dockstore.org/workflows/github.com/hacchy1983/wdl-bamstats https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/pre_merge_sv_single https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-merge https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-merge1 https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-post-merge https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-postmerge https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-pre-merge https://dockstore.org/workflows/github.com/hall-lab/sv-pipeline/sv-premerge https://dockstore.org/workflows/github.com/hcholab/sfkit https://dockstore.org/workflows/github.com/hdashnow/strling-wdl https://dockstore.org/workflows/github.com/hdashnow/test-wdl https://dockstore.org/workflows/github.com/hesamhakim/samtools-view https://dockstore.org/workflows/github.com/hesamhakim/samtools_view_terra https://dockstore.org/workflows/github.com/hesamhakim/samtools_view_terra/samtools_bam2cram https://dockstore.org/workflows/github.com/hesamhakim/transferFiles_GTexToGCP https://dockstore.org/workflows/github.com/hloucks/BWA_WDL https://dockstore.org/workflows/github.com/hloucks/FCS-WDL https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/CellBender https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Cellranger https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Cellranger_atac_create_reference https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Cellranger_create_reference https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Cellranger_vdj_create_reference https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Cumulus https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Demultiplexing https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/GeoMx_dcc_to_count_matrix https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/GeoMx_fastq_to_dcc https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/STAR https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/STAR_TE https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/STARsolo https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/STARsolo_create_reference https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Smart-Seq2_create_reference https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/Spaceranger https://dockstore.org/workflows/github.com/hoangmgh/cumulus-1/starsolo_count_final https://dockstore.org/workflows/github.com/hoholee/dockstore_practice/test_bam_workflow https://dockstore.org/workflows/github.com/hubmapconsortium/salmon-rnaseq https://dockstore.org/workflows/github.com/hubmapconsortium/sc-atac-seq-pipeline/HuBMAP_scATAC-seq_Pipeline https://dockstore.org/workflows/github.com/hubmapconsortium/spatial-transcriptomics-pipeline https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AdjustMapQ https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AlignSubetReads https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Asm2AsmAligner https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Asmgene https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssemblyCleanUp https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Asset https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetBamInput https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetBamInputHiFi https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetBamInputOntHiFi https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetBamInputOntHiFiBionano https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetMerge https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/AssetMergeLongRead https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/BUSCO https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Bam2Paf https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/BamCoverage https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/BamCoverageSimplified https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Bed2Fasta https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/BionanoAlignment https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/BreakIntoContigs https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Bwa https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/CalMD https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ChimericAnalysis https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ConcatAssemblies https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Contamination https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/CorrectBam https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Cov2Counts https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Cov2Wig https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/CoverageAnalysisStep1 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/CoverageAnalysisV1 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/DeepVariant https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/DeepVariantNoSplit https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Dipcall https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/DnaBrnn https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/DownSampling https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ExtractMitoContigs https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FilterAltReads https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FilterHiFiAdapter https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FilterShortReads https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FinalizeAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FindBlocks https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FitModelByCounts https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FitModelByCoverage https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FlaggerPhase1 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FlaggerPhase2 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FullAlignmentForAsset https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/FullQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GenerateWig https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GetCopyValFinalBed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GetFlaggerFinalBed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GetPhasedReadIds https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GreatLengths https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Guppy https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/GuppyFast5s https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/HetEstimation https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/HiCHifiasmAssemblyStep2 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/HiCHifiasmAssemblyStep3 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/LengthFilterFasta https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/LiftOff https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/LongReadAligner https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/LongReadAlignerSplit https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/LongReadAlignerSplitPaf https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MapBlocks https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Mash https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MaskAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MergeColorBeds https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MergeSortedBams https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Merqury https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Meryl https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MinigraphMap https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/MisjoinCheck https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/NTSM https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/NucFreq https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/PepperMarginDeepVariant https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/PepperMarginDeepVariantSplit https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/PhaseReads https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/PhasedGFAs2Fasta https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Primrose https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProbTable2Bed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProduceFai https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProjectBlocks https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProjectBlocksComps https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProjectCopyValFinalBed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ProjectFlaggerFinalBed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Pstools https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Quast https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/RM2Bed https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ReadStats https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/Readsbam4DC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/SamtoolsView https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/SecPhase https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ShortDiploidQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/StainedGlass https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/StandardQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/StandardQCHaploid https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/StandardQCnoQV https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/StandardQCnonTrio https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/SubsetCoverage https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioHifiasmAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioHifiasmAssemblyStep3 https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioHifiasmAssemblyYakInput https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioHifiasmAssemblyYakInputCutadapt https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioHifiasmAssemblyYakInputCutadaptMultiStep https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioVerkkoAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/TrioVerkkoAssemblyScatter https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VariantCalling https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerityMap https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoAssemblyScatter https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoConsensusFromGFAse https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoCreateUnphasedGFA https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoExtractPhasedAsms https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoHiCPhasing https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/VerkkoRephaseRukki https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/WhatsHapHaplotag https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/YakAsmStats https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/YakNoStats https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/YakNoStatsHiFi https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/asmChrCompleteness https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/asmComparisonQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/asmComparisonQCdiploid https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/chopperFilter https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/compleasmRun https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/dropFastaContigs https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/fastqReadCounts https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/fastqReadCoverage https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/finalizeGenbankAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/findMitoContigs https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/hifiQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ontQC https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ontSummaryStats https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/s5cmd_download https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/snvInDelAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/ssdsTerraUpload https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/svAssembly https://dockstore.org/workflows/github.com/human-pangenomics/hpp_production_workflows/writeUnmappedReads https://dockstore.org/workflows/github.com/ibrahimjabarkhel/toolkit-for-generating-test-data https://dockstore.org/workflows/github.com/icgc-argo-workflows/dnaalnqc/dnaalnqc https://dockstore.org/workflows/github.com/icgc-argo-workflows/icgc-argo-mutational-signatures https://dockstore.org/workflows/github.com/icgc-argo-workflows/prealnqc/prealnqc https://dockstore.org/workflows/github.com/icgc-argo/dna-seq-processing-wfs https://dockstore.org/workflows/github.com/ilyasoifer/wdl_demo/testing_WDL https://dockstore.org/workflows/github.com/insidemymind/trust4v113 https://dockstore.org/workflows/github.com/iwc-workflows/Assembly-Hifi-HiC-phasing-VGP4/main https://dockstore.org/workflows/github.com/iwc-workflows/Assembly-Hifi-Trio-phasing-VGP5/main https://dockstore.org/workflows/github.com/iwc-workflows/Assembly-Hifi-only-VGP3/main https://dockstore.org/workflows/github.com/iwc-workflows/Assembly-decontamination-VGP9/main https://dockstore.org/workflows/github.com/iwc-workflows/ChIPseq_PE/main https://dockstore.org/workflows/github.com/iwc-workflows/Mitogenome-assembly-VGP0/main https://dockstore.org/workflows/github.com/iwc-workflows/Plot-Nx-Size/main https://dockstore.org/workflows/github.com/iwc-workflows/Purge-duplicate-contigs-VGP6/main https://dockstore.org/workflows/github.com/iwc-workflows/Purge-duplicates-one-haplotype-VGP6b/main https://dockstore.org/workflows/github.com/iwc-workflows/Scaffolding-Bionano-VGP7/main https://dockstore.org/workflows/github.com/iwc-workflows/Scaffolding-HiC-VGP8/main https://dockstore.org/workflows/github.com/iwc-workflows/VGP-meryldb-creation-trio/main https://dockstore.org/workflows/github.com/iwc-workflows/VGP-meryldb-creation/main https://dockstore.org/workflows/github.com/iwc-workflows/allele-based-pathogen-identification/main https://dockstore.org/workflows/github.com/iwc-workflows/amr_gene_detection/main https://dockstore.org/workflows/github.com/iwc-workflows/annotation-helixer/main https://dockstore.org/workflows/github.com/iwc-workflows/assembly-with-flye/main https://dockstore.org/workflows/github.com/iwc-workflows/atacseq/main https://dockstore.org/workflows/github.com/iwc-workflows/average-bigwig-between-replicates/main https://dockstore.org/workflows/github.com/iwc-workflows/bacterial-genome-assembly/main https://dockstore.org/workflows/github.com/iwc-workflows/bacterial_genome_annotation/main https://dockstore.org/workflows/github.com/iwc-workflows/baredsc/baredSC-1d-logNorm https://dockstore.org/workflows/github.com/iwc-workflows/baredsc/baredSC-2d-logNorm https://dockstore.org/workflows/github.com/iwc-workflows/brew3r/main https://dockstore.org/workflows/github.com/iwc-workflows/chipseq-pe/main https://dockstore.org/workflows/github.com/iwc-workflows/chipseq-sr/main https://dockstore.org/workflows/github.com/iwc-workflows/clinicalmp-data-interpretation/main https://dockstore.org/workflows/github.com/iwc-workflows/clinicalmp-database-generation/main https://dockstore.org/workflows/github.com/iwc-workflows/clinicalmp-discovery/main https://dockstore.org/workflows/github.com/iwc-workflows/clinicalmp-quantitation/main https://dockstore.org/workflows/github.com/iwc-workflows/clinicalmp-verification/main https://dockstore.org/workflows/github.com/iwc-workflows/consensus-peaks/consensus-peaks-atac-cutandrun https://dockstore.org/workflows/github.com/iwc-workflows/consensus-peaks/consensus-peaks-chip-pe https://dockstore.org/workflows/github.com/iwc-workflows/consensus-peaks/consensus-peaks-chip-sr https://dockstore.org/workflows/github.com/iwc-workflows/cutandrun/main https://dockstore.org/workflows/github.com/iwc-workflows/dada2/main https://dockstore.org/workflows/github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-cellplex https://dockstore.org/workflows/github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3 https://dockstore.org/workflows/github.com/iwc-workflows/fluorescence-nuclei-segmentation-and-counting/main https://dockstore.org/workflows/github.com/iwc-workflows/fragment-based-docking-scoring/main https://dockstore.org/workflows/github.com/iwc-workflows/functional-annotation-protein-sequences/main https://dockstore.org/workflows/github.com/iwc-workflows/gcms-metams/main https://dockstore.org/workflows/github.com/iwc-workflows/gene-based-pathogen-identification/main https://dockstore.org/workflows/github.com/iwc-workflows/generic-variant-calling-wgs-pe/main https://dockstore.org/workflows/github.com/iwc-workflows/goseq/main https://dockstore.org/workflows/github.com/iwc-workflows/gromacs-dctmd/main https://dockstore.org/workflows/github.com/iwc-workflows/gromacs-mmgbsa/main https://dockstore.org/workflows/github.com/iwc-workflows/haploid-variant-calling-wgs-pe/main https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/chic-fastq-to-cool-hicup-cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/chic_fastq_to_cool_hicup_cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic-fastq-to-cool-hicup-cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic-fastq-to-pairs-hicup https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic-juicermediumtabix-to-cool-cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic-juicermediumtabix-to_cool-cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic_fastq_to_cool_hicup_cooler https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic_fastq_to_pairs_hicup https://dockstore.org/workflows/github.com/iwc-workflows/hic-hicup-cooler/hic_juicermediumtabix_to_cool_cooler https://dockstore.org/workflows/github.com/iwc-workflows/influenza-isolates-consensus-and-subtyping/main https://dockstore.org/workflows/github.com/iwc-workflows/kmer-profiling-hifi-VGP1/main https://dockstore.org/workflows/github.com/iwc-workflows/kmer-profiling-hifi-trio-VGP2/main https://dockstore.org/workflows/github.com/iwc-workflows/lcms-preprocessing/main https://dockstore.org/workflows/github.com/iwc-workflows/mapseq-to-ampvis2/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-pipeline-v5-complete/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-pipeline-v5-its/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-pipeline-v5-quality-control-paired-end/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-pipeline-v5-quality-control-single-end/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-pipeline-v5-rrna-prediction/main https://dockstore.org/workflows/github.com/iwc-workflows/mgnify-amplicon-taxonomic-summary-tables/main https://dockstore.org/workflows/github.com/iwc-workflows/nanopore-pre-processing/main https://dockstore.org/workflows/github.com/iwc-workflows/openms-metaprosip/main https://dockstore.org/workflows/github.com/iwc-workflows/parallel-accession-download/main https://dockstore.org/workflows/github.com/iwc-workflows/pathogen-detection-pathogfair-samples-aggregation-and-visualisation/main https://dockstore.org/workflows/github.com/iwc-workflows/polish-with-long-reads/main https://dockstore.org/workflows/github.com/iwc-workflows/pox-virus-amplicon/main https://dockstore.org/workflows/github.com/iwc-workflows/protein-ligand-complex-parameterization/main https://dockstore.org/workflows/github.com/iwc-workflows/pseudobulk-worflow-decoupler-edger/main https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-I-import/Ia-import-multiplexed-se https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-I-import/Ib-import-multiplexed-pe https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-I-import/Ic-import-demultiplexed-se https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-I-import/Id-import-demultiplexed-pe https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-II-denoising/IIa-denoising-se https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-II-denoising/IIb-denoising-pe https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-III-VI-downsteam/QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis https://dockstore.org/workflows/github.com/iwc-workflows/qiime2-III-VI-downsteam/QIIME2-VI-diversity-metrics-and-estimations https://dockstore.org/workflows/github.com/iwc-workflows/quality-and-contamination-control/main https://dockstore.org/workflows/github.com/iwc-workflows/repeatmasking/main https://dockstore.org/workflows/github.com/iwc-workflows/rnaseq-de/main https://dockstore.org/workflows/github.com/iwc-workflows/rnaseq-pe/main https://dockstore.org/workflows/github.com/iwc-workflows/rnaseq-sr/main https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-consensus-from-variation/COVID-19-CONSENSUS-CONSTRUCTION https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-ont-artic-variant-calling/COVID-19-ARTIC-ONT https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-pe-illumina-artic-ivar-analysis/SARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-pe-illumina-artic-variant-calling/COVID-19-PE-ARTIC-ILLUMINA https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-pe-illumina-wgs-variant-calling/COVID-19-PE-WGS-ILLUMINA https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-se-illumina-wgs-variant-calling/COVID-19-SE-WGS-ILLUMINA https://dockstore.org/workflows/github.com/iwc-workflows/sars-cov-2-variation-reporting/COVID-19-VARIATION-REPORTING https://dockstore.org/workflows/github.com/iwc-workflows/scanpy-clustering/main https://dockstore.org/workflows/github.com/iwc-workflows/sra-manifest-to-concatenated-fastqs/main https://dockstore.org/workflows/github.com/iwc-workflows/taxonomic-rank-abundance-summary-table/main https://dockstore.org/workflows/github.com/iwc-workflows/taxonomy-profiling-and-visualization-with-krona/main https://dockstore.org/workflows/github.com/iwc-workflows/variation-reporting/main https://dockstore.org/workflows/github.com/iwc-workflows/velocyto/Velocyto-on10X-filtered-barcodes https://dockstore.org/workflows/github.com/iwc-workflows/velocyto/Velocyto-on10X-from-bundled https://dockstore.org/workflows/github.com/izabellaleahz/hotspot_spatial_workflow https://dockstore.org/workflows/github.com/izabellaleahz/hotspot_workflow https://dockstore.org/workflows/github.com/izabellaleahz/max_spin_workflow https://dockstore.org/workflows/github.com/izabellaleahz/tangram_workflow https://dockstore.org/workflows/github.com/j-p-courneya/wdl_bootcamp_may https://dockstore.org/workflows/github.com/j23414/mini_nf https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/dengue_build https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/dengue_ingest https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/genbank_ingest https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/gisaid_ingest https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/measles_build https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/ncov https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/pathogen_build https://dockstore.org/workflows/github.com/j23414/wdl_pathogen_build/zika_build https://dockstore.org/workflows/github.com/jacksoncs51/cumulus/Cellranger https://dockstore.org/workflows/github.com/jamesemery/warp/VariantCalling https://dockstore.org/workflows/github.com/jasmine-amir/microrunqc-wdl-JA https://dockstore.org/workflows/github.com/jason-cerrato/dockstore_wdl_09012022/gsutil_cp https://dockstore.org/workflows/github.com/jason-cerrato/terra-wf-test-AUG2022/gsutil_cp https://dockstore.org/workflows/github.com/jason-cerrato/warp_202208_test/JointGenotyping https://dockstore.org/workflows/github.com/jasonwalker80/qc-analysis-pipeline https://dockstore.org/workflows/github.com/jaspreetishar/segmentation_test https://dockstore.org/workflows/github.com/jbmchls/warp/JointGenotyping https://dockstore.org/workflows/github.com/jessicaway/warp/VariantCalling https://dockstore.org/workflows/github.com/jiangaing/Bulk_RNA_pipeline https://dockstore.org/workflows/github.com/jiangaing/Terra_test https://dockstore.org/workflows/github.com/jiangaing/Terra_test/_wdl_checker https://dockstore.org/workflows/github.com/jiangaing/VCF_TOOLS https://dockstore.org/workflows/github.com/jidc-trust/ribosomal-wdl/RCTyping https://dockstore.org/workflows/github.com/jigold/bge-glimpse2 https://dockstore.org/workflows/github.com/jimin001/WDLs/DeepSomatic_ONT_tumoronly https://dockstore.org/workflows/github.com/jivesh-enigma/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/jivesh-enigma/wdl-bootcamp-dockstore-practice https://dockstore.org/workflows/github.com/jlanej/mosdepth-docker https://dockstore.org/workflows/github.com/jlanej/samtools-view https://dockstore.org/workflows/github.com/jlanej/samtools-view/mosdepth https://dockstore.org/workflows/github.com/jlanej/samtools-view/telseq https://dockstore.org/workflows/github.com/jmchilton/galaxy-workflow-dockstore-example-1/mycoolworkflow https://dockstore.org/workflows/github.com/jmchilton/galaxy-workflow-dockstore-example-2 https://dockstore.org/workflows/github.com/jmchilton/galaxy-workflow-dockstore-example-3 https://dockstore.org/workflows/github.com/jmonlong/card_nanopore_wf/cardEndToEndVcf https://dockstore.org/workflows/github.com/jmonlong/card_nanopore_wf/cardEndToEndVcfMethyl https://dockstore.org/workflows/github.com/jmonlong/card_nanopore_wf/marginPhase https://dockstore.org/workflows/github.com/jmonlong/card_nanopore_wf/shasta https://dockstore.org/workflows/github.com/jmonlong/card_workflows/evaluateSVsWithTTMars https://dockstore.org/workflows/github.com/jmonlong/card_workflows/smallVariantsReferenceBased https://dockstore.org/workflows/github.com/jmonlong/docker-phasebook/phasebook https://dockstore.org/workflows/github.com/jmonlong/lr_sv_calling_wf/lr_sv_calling https://dockstore.org/workflows/github.com/jmonlong/read_coverage_wf/read_coverage https://dockstore.org/workflows/github.com/jmonlong/sv_evaluation_wf/sv_evaluation https://dockstore.org/workflows/github.com/jmonlong/variant_annotation_wf/annotate_variants https://dockstore.org/workflows/github.com/jmonlong/variant_annotation_wf/denovo_svs https://dockstore.org/workflows/github.com/jmonlong/wdl-minimap2/minimap2 https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/AddUnmappedGamBam https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/AlignStats https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/AsmGene https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/ChimeraStats https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/GuppyBasecalling https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/IndexBam https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/QuastQC https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/ReadStats https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/SNPeffAnnotate https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/SubsetFastqByQscore https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/VcfStats https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/WhatsHapCompare https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/bcftools_merge https://dockstore.org/workflows/github.com/jmonlong/wdl-workflows/minimap2 https://dockstore.org/workflows/github.com/johnpshelley/agd_genotypeconcordance/ExtractSubset_AGD https://dockstore.org/workflows/github.com/johnpshelley/agd_genotypeconcordance/ExtractSubset_MEGA https://dockstore.org/workflows/github.com/johnpshelley/agd_genotypeconcordance/PLINK_SexCheck https://dockstore.org/workflows/github.com/johnpshelley/agd_genotypeconcordance/PLINK_SexCheck_Array https://dockstore.org/workflows/github.com/johnpshelley/agd_genotypeconcordance/VUMC_CalculateGenotypeConcordance https://dockstore.org/workflows/github.com/johnstonelab/nanopore-tools/Dorado_Basecall https://dockstore.org/workflows/github.com/johnstonelab/nanopore-tools/Dorado_basecall_demux https://dockstore.org/workflows/github.com/johnstonelab/nanopore-tools/bamtobigwig-jhs https://dockstore.org/workflows/github.com/jonathanztangwustl/fusions_mutect/fusions_mutect https://dockstore.org/workflows/github.com/jonnguye/AnVIL_TEST https://dockstore.org/workflows/github.com/jorgeamaya/AmpSeq https://dockstore.org/workflows/github.com/jorgeamaya/MHap https://dockstore.org/workflows/github.com/jorgeamaya/MHap_Analysis https://dockstore.org/workflows/github.com/jorgeamaya/VectorSeq_Terra https://dockstore.org/workflows/github.com/jorgeamaya/amplicon_decontamination_pipeline https://dockstore.org/workflows/github.com/jorgeamaya/malaria_experimental/ampseq_experimental https://dockstore.org/workflows/github.com/jorgeamaya/malaria_experimental/mhap_experimental https://dockstore.org/workflows/github.com/juancarlosfdc/gatk/cnv_somatic_pair_workflow https://dockstore.org/workflows/github.com/juancarlosfdc/gatk/cnv_somatic_panel_workflow https://dockstore.org/workflows/github.com/juklucas/HPRC_Assembly_Hub/create_browser_chains https://dockstore.org/workflows/github.com/juklucas/fix_replace_mito_contigs https://dockstore.org/workflows/github.com/juklucas/hpp_trio_qc https://dockstore.org/workflows/github.com/juklucas/ucsc-bootcamp-wdl https://dockstore.org/workflows/github.com/jump-cellpainting/embedder https://dockstore.org/workflows/github.com/juniper-lake/CoLoRS/colors_cohort https://dockstore.org/workflows/github.com/k-florek/public_health_viral_genomics https://dockstore.org/workflows/github.com/karinab2000/interpret-barcodes/interpret-barcodes https://dockstore.org/workflows/github.com/karinab2000/interpret-barcodes/run-incidence-regression https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/1000-3000-comparison https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/1000-3000-comparison-standard https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/compile-standard3000 https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/hello-world https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/vcf-to-zarr-trial https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/vcf-to-zarr-trial-subset https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/vcf-to-zarr-trial3 https://dockstore.org/workflows/github.com/karinab2000/learn-wdl/wdl-zarr-file https://dockstore.org/workflows/github.com/kathy-t/SRANWRP/pull_FASTQs_from_SRA_by_run https://dockstore.org/workflows/github.com/kathy-t/ghapps-single-workflow https://dockstore.org/workflows/github.com/kathy-t/ghapps-single-workflow/defaultVersionTestPublish https://dockstore.org/workflows/github.com/kathy-t/hello-wdl-workflow https://dockstore.org/workflows/github.com/kathy-t/workflow-dockstore-yml/foobar https://dockstore.org/workflows/github.com/kaushik-work/elixir-gwas https://dockstore.org/workflows/github.com/kaushik-work/simple-passthrough-cwl https://dockstore.org/workflows/github.com/kbolton-lab/ArCH/ArCH https://dockstore.org/workflows/github.com/kbolton-lab/ArCH/ArCH-PoN-Pileup https://dockstore.org/workflows/github.com/kbolton-lab/ArCH/ArCH-PoN2 https://dockstore.org/workflows/github.com/kbolton-lab/ArCH/ArCH-WGS-VariantCalling https://dockstore.org/workflows/github.com/kee007ney/ismb2024 https://dockstore.org/workflows/github.com/kendaida/TRUST4_wdl/trust4_v1_1_5 https://dockstore.org/workflows/github.com/kendaida/mtDNA https://dockstore.org/workflows/github.com/kennyaun/ismb2024 https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/AlignAssemblyToRef https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/AlignToAssembly https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/GenotypeForceCall https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/PBAssembleWithHifiasm https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/PBAssembleWithHifiasmRAFT https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/PBCCSWholeGenome https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/PBFlowcell https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/PBHifiasmQuast https://dockstore.org/workflows/github.com/kimkh415/long-read-pipelines/RunQuastQC https://dockstore.org/workflows/github.com/kimkh415/pav-wdl/AssemblyBased https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cellranger https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cellranger_atac_aggr https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cellranger_atac_create_reference https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cellranger_create_reference https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cellranger_vdj_create_reference https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Count https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Cumulus https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Demultiplexing https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/InferCNV https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/STARsolo https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/STARsolo_create_reference https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Smart-Seq2 https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/Smart-Seq2_create_reference https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/SpaceRanger https://dockstore.org/workflows/github.com/klarman-cell-observatory/cumulus/bam2fastq https://dockstore.org/workflows/github.com/klarman-cell-observatory/kco_curio https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/_wdl_checker https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/alphaSatHOR-StV https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/extractAssemblyContigsInRegion https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/fastaKmerCount https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/identify-hSat2and3 https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/kmcCount https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/ntrprism-to-bedgraph https://dockstore.org/workflows/github.com/kmiga/alphaAnnotation/readKmerCount https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/GatherSampleEvidence https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/KN_GatherSampleEvidence https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/KN_Manta_WDL https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/KN_PESRPreprocessing https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/MosaicDepth https://dockstore.org/workflows/github.com/knathamuni/KN-gatk-sv/RDTest_KN https://dockstore.org/workflows/github.com/knathamuni/variant-interpretation/Relatedness_WDL_Alba https://dockstore.org/workflows/github.com/knathamuni/variant-interpretation/RunDeNovoSVs https://dockstore.org/workflows/github.com/knathamuni/variant-interpretation/runFamilyFiltering https://dockstore.org/workflows/github.com/knathamuni/warp/Jointgenotyping_Modified https://dockstore.org/workflows/github.com/knathamuni/warp/Merge_Crams https://dockstore.org/workflows/github.com/knathamuni/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/kockan/kockanlib/DownsampleSam https://dockstore.org/workflows/github.com/kshakir/warp/JointGenotyping_kshakir https://dockstore.org/workflows/github.com/kshakir/warp/ReblockGVCF https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/analyze_motif_contributions https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/fastpredict https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/gc_matched_negatives https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/modelling https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/modisco https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/outlier_detection https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/reports https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/run_performance_reports https://dockstore.org/workflows/github.com/kundajelab/TF-Atlas/shap https://dockstore.org/workflows/github.com/kundajelab/anvil-variant-scoring https://dockstore.org/workflows/github.com/kundajelab/chromatin-atlas-anvil/gc-matching-negatives-chromatin https://dockstore.org/workflows/github.com/kundajelab/chromatin-atlas-anvil/modelling-chromatin-bpnet https://dockstore.org/workflows/github.com/kundajelab/chromatin-atlas-anvil/preprocessing-chromatin https://dockstore.org/workflows/github.com/kwesterman/fetch-dbgap-data-workflow https://dockstore.org/workflows/github.com/kwesterman/test-workflow https://dockstore.org/workflows/github.com/l3hte/wdl_tes2/input-task https://dockstore.org/workflows/github.com/l3hte/wdl_test1/hello1 https://dockstore.org/workflows/github.com/laitanawe/ismb2024 https://dockstore.org/workflows/github.com/laitanawe/ismb2024/galaxy_example https://dockstore.org/workflows/github.com/laitanawe/ismb2024/nextflow_example https://dockstore.org/workflows/github.com/lanjiangVUMC/ExtractPlinkVariants/ExtractPlinkVariants https://dockstore.org/workflows/github.com/large-scale-gxe-methods/gem-workflow-noMKL https://dockstore.org/workflows/github.com/large-scale-gxe-methods/gem-workflow/gem-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/genotype-conversion/genotype-conversion https://dockstore.org/workflows/github.com/large-scale-gxe-methods/magee-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/magee-workflow/magee-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/metagem-workflow/metagem-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/plink2-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/probabel-workflow/probabel-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/quicktest-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/regem-workflow/regem-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/spage-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/subset-genotypes-workflow https://dockstore.org/workflows/github.com/large-scale-gxe-methods/sugen-workflow https://dockstore.org/workflows/github.com/lbergelson/parabricks-wdl https://dockstore.org/workflows/github.com/leepc12/test-terra-checkfiles/test-terra-checkfiles https://dockstore.org/workflows/github.com/leepc12/test_terra_nextflow/test_terra_nextflow https://dockstore.org/workflows/github.com/lijin0303/ctat-mutations https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/CellBender https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cellranger https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cellranger_atac_aggr https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cellranger_atac_create_reference https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cellranger_create_reference https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cellranger_vdj_create_reference https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Cumulus https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Demultiplexing https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMx_dcc_to_count_matrix https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/GeoMx_fastq_to_dcc https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/InferCNV https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/STARsolo https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/STARsolo_create_reference https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Smart-Seq2 https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Smart-Seq2_create_reference https://dockstore.org/workflows/github.com/lilab-bcb/cumulus/Spaceranger https://dockstore.org/workflows/github.com/ll3515/Terra_test https://dockstore.org/workflows/github.com/llangit-czi/dockstore-test https://dockstore.org/workflows/github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq/salmon-rnaseq-wdl https://dockstore.org/workflows/github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq/salmon-rnaseq-wdl_wdl_checker https://dockstore.org/workflows/github.com/lydiarck/wdl-bootcamp-may https://dockstore.org/workflows/github.com/lytarhan/ForkedDockstoreTest/Arrays https://dockstore.org/workflows/github.com/lytarhan/ISMB-WDL-Workshop/STARsolo https://dockstore.org/workflows/github.com/lytarhan/dockstoreWDLTest-delete https://dockstore.org/workflows/github.com/lytarhan/wdl-bootcamp-ismb-practice https://dockstore.org/workflows/github.com/lytarhan/wdl-for-azure https://dockstore.org/workflows/github.com/mackellardrew/phb_dcm/BaseSpace_Fetch_PHB https://dockstore.org/workflows/github.com/madduran/dockstore/GenerateIGVSession https://dockstore.org/workflows/github.com/malariagen/pipelines/MalariaVector_CNV https://dockstore.org/workflows/github.com/malariagen/pipelines/MalariaVector_Phasing https://dockstore.org/workflows/github.com/malariagen/pipelines/MalariaVector_ShortReadAlignmentAndGenotyping https://dockstore.org/workflows/github.com/manning-lab/fetch-dbgap-data-workflow https://dockstore.org/workflows/github.com/manning-lab/regenie-workflow https://dockstore.org/workflows/github.com/manning-lab/singleVariantAssociation/summaryCSV https://dockstore.org/workflows/github.com/manning-lab/subset-vcf-workflow https://dockstore.org/workflows/github.com/manning-lab/vcfToGds https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_Isolates_Illumina_PE https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_Plate_Swipes_Illumina_PE https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_QC_flags_row https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_QC_flags_table https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_StrainGR https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/GEMSTONE_status https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/Kraken2_Bracken_PE https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/MetaWRAP_PE https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/StrainGE_PE https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/StrainGR_compare https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/StrainGR_prepare https://dockstore.org/workflows/github.com/marcoteix/gemstone-workflows/StrainGST_top_strain https://dockstore.org/workflows/github.com/markgodek/cumulus/CellBender https://dockstore.org/workflows/github.com/markgodek/cumulus/Cellranger https://dockstore.org/workflows/github.com/markgodek/cumulus/Cellranger_atac_create_reference https://dockstore.org/workflows/github.com/markgodek/cumulus/Cellranger_create_reference https://dockstore.org/workflows/github.com/markgodek/cumulus/Cellranger_vdj_create_reference https://dockstore.org/workflows/github.com/markgodek/cumulus/Cumulus https://dockstore.org/workflows/github.com/markgodek/cumulus/Demultiplexing https://dockstore.org/workflows/github.com/markgodek/cumulus/GeoMx_dcc_to_count_matrix https://dockstore.org/workflows/github.com/markgodek/cumulus/GeoMx_fastq_to_dcc https://dockstore.org/workflows/github.com/markgodek/cumulus/STARsolo https://dockstore.org/workflows/github.com/markgodek/cumulus/STARsolo_create_reference https://dockstore.org/workflows/github.com/markgodek/cumulus/Smart-Seq2_create_reference https://dockstore.org/workflows/github.com/markgodek/cumulus/Spaceranger https://dockstore.org/workflows/github.com/masri2019/hpp-assembly/TrioHifiasmAssembly https://dockstore.org/workflows/github.com/masri2019/hpp-assembly/asset-without-hifi-alignment https://dockstore.org/workflows/github.com/masri2019/hpp-assembly/asset_long_reads_alignment https://dockstore.org/workflows/github.com/masri2019/hpp-assembly/qualityControl https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/Cov2Counts https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/Cov2CountsFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/Cov2CountsMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ExclusionStep https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ExclusionStepFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FillGapsFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FillGapsMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FindBlocksFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FindBlocksMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FitModelByCounts https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FitModelFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/FitModelMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/LongReadAlignerSplit https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ProduceAutosomalBed https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ProduceSexBed https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ProjectBlocks https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ProjectBlocksFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/ProjectBlocksMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverage https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverageFemale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverageMale https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubtractBedFiles https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/UnionBedFiles https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/VariantCalling https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Gene_Diff_Exp https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Generate_Input_Files https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Prepare_Count_Files https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/runcSplotch https://dockstore.org/workflows/github.com/mattions/demo-workflows https://dockstore.org/workflows/github.com/maurya-anand/wdl-qc https://dockstore.org/workflows/github.com/mawumag/warp/AnnoCohort https://dockstore.org/workflows/github.com/mawumag/warp/ExtractGeneFromCohort https://dockstore.org/workflows/github.com/mawumag/warp/FastQsToGvcf https://dockstore.org/workflows/github.com/mawumag/warp/FilterFamily https://dockstore.org/workflows/github.com/mawumag/warp/GvcfToCohortVcf https://dockstore.org/workflows/github.com/mdaya/hla_la_typing/hla_la_typing https://dockstore.org/workflows/github.com/mdaya/pcair_pcrelate/pcair_pcrelate_unpruned_imputed https://dockstore.org/workflows/github.com/mdaya/pcair_pcrelate/pcair_pcrelate_unpruned_wgs https://dockstore.org/workflows/github.com/mei-knudson/TOBIAS/TOBIAS https://dockstore.org/workflows/github.com/mei-knudson/atac-seq-pipeline/ATAC-seq https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/asmgene https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/dipcall https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/dipcall_whatshap_asmgene https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/evaluate_contacts https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfaseTrioWorkflow https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfaseWorkflow https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_base_qv_evaluation https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_base_qv_trio_evaluation https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_sv_evaluation https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/kmc3 https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/yak_dipcall_whatshap_asmgene https://dockstore.org/workflows/github.com/meredith705/ont_methylation/PMDVhaplotag https://dockstore.org/workflows/github.com/meredith705/ont_methylation/methylTaggedReadsMinimap2 https://dockstore.org/workflows/github.com/meredith705/ont_methylation/methylationONT https://dockstore.org/workflows/github.com/meredith705/ont_methylation/modbam2bedPhased https://dockstore.org/workflows/github.com/meredith705/wambam/wambam https://dockstore.org/workflows/github.com/meredith705/wdl-workflows/ChimeraStats https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/flye https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/happyEval https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/quastOutput https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/seqkitStats https://dockstore.org/workflows/github.com/metoru/learing https://dockstore.org/workflows/github.com/metoru/learing/_wdl_checker https://dockstore.org/workflows/github.com/mewhitebroad/mars/JointGenotypingMars https://dockstore.org/workflows/github.com/mewhitebroad/mars/JointVcfFilteringMars https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/AlamutBatchWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/AncestryAdjustment https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainAlamutWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainAnnotationsWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainMergeFASTExportsWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainPGxRiskWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainPipelinesWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainSampleLoadingWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainSamplePrepWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BamsurgeonWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BgwgsPanelWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BgwgsWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRAlamutWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRFASTParsingWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRMergeFASTExportsWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRSampleLoadingWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRSamplePrepWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankScrub https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankScrubWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankShardingWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/CTBHaplotypeCallerGvcf https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/CopySampleFilesWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DepthOfCoverageWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DownloadOutputsSetWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DownloadOutputsWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/E2ETestWorkflowOne https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/E2ETestWorkflowSet https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/EtcTemp https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/Glimpse2Imputation https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/Glimpse2SplitReference https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/JointCalling https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/LmmgapWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/MergeCrams https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PGxWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSAdjustmentWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMakeAdjustmentModel https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMixModelWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMixScoreWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSOrchestrationWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPCAWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPerformPopulationPCA https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPreparePrsMixInputs https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSRawScoreWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSRunPRS https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSScoreQueryVcf https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSScoreVcfWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSScoringPartRunner https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSSummaryWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PerformPCA https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/ReblockGVCFandPush https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/RiskAllelesWorkflow https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/Scoring https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/ScoringPart https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/SubsetShards https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/TestWorkflowFailure https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowMultiAlternate https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowMultiParticipant https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowMultiSample https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowOne https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowSingleAlternate https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowSingleParticipant https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowSingleSample https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/VEP_development https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/insiMWorkflow https://dockstore.org/workflows/github.com/mgeaghan-garvan/KCCG-CB-WDLPipelines/WGSVariantPipeline https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_Annotate_Cohort https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_Annovar https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_CHIP https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_CHIP_Cohort https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_Call_U2AF1 https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_ExtractPass https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_M2 https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_PoN https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_SpliceAI https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_VEP https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-spliceai/KCCGSpliceAI https://dockstore.org/workflows/github.com/mgeaghan-garvan/mocha-wgs/MochaWgsPreprocess https://dockstore.org/workflows/github.com/mgeaghan-garvan/warp/WholeGenomeFromFastq https://dockstore.org/workflows/github.com/mgeaghan-garvan/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/michaelgatzen/warp/UnmappedBamToAlignedBam https://dockstore.org/workflows/github.com/michaelgatzen/warp/VariantCalling https://dockstore.org/workflows/github.com/miramastoras/CDR_detect/CDR_detect https://dockstore.org/workflows/github.com/miramastoras/card_nanopore_wf/clair3 https://dockstore.org/workflows/github.com/miramastoras/card_nanopore_wf/marginPhaseSmall https://dockstore.org/workflows/github.com/miramastoras/card_nanopore_wf/pepperMarginDvWorkflow https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/Asm2AsmAlignerPaf https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/Dipcall https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/DipcallHappyEval https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/Merfin https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/Merqury https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/MerquryEval https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/MerylNonTrio https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/SepReadsByHaplotype https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/YakAsmStats https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/applyPolish https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/bcftoolsFilter https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/correctBam https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/deepVariant https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/extractReads https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/filterVCFDups https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/getMapQTable https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/hapDotPy https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/longReadAligner https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/marginPhase https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/mergeBam https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/pepperMarginDeepVariant https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygous https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousFaster https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousFaster2 https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousV4 https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/snvInDelAssembly https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/subBamByBed https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/whatsHapPhase https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/yakNonTrio https://dockstore.org/workflows/github.com/mkim55/deepvar-wdl/deepvariant https://dockstore.org/workflows/github.com/mobinasri/flagger/Asm2AsmAligner https://dockstore.org/workflows/github.com/mobinasri/flagger/BamCoverage https://dockstore.org/workflows/github.com/mobinasri/flagger/DeepVariantScattered https://dockstore.org/workflows/github.com/mobinasri/flagger/Flagger https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEnd https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndNoVariantCalling https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndNoVariantCallingNoRef https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndWithMapping https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerPreprocess https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerPreprocessNoVariantCalling https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerStats https://dockstore.org/workflows/github.com/mobinasri/flagger/HMM-Flagger https://dockstore.org/workflows/github.com/mobinasri/flagger/HMMFlaggerEndToEnd https://dockstore.org/workflows/github.com/mobinasri/flagger/HMMFlaggerEndToEndWithMapping https://dockstore.org/workflows/github.com/mobinasri/flagger/LongReadAlignerScattered https://dockstore.org/workflows/github.com/mobinasri/flagger/LongReadAlignerSecphase https://dockstore.org/workflows/github.com/mobinasri/flagger/ProjectBlocks https://dockstore.org/workflows/github.com/mobinasri/flagger/ProjectBlocksForFlagger https://dockstore.org/workflows/github.com/mobinasri/flagger/SubsetAlignment https://dockstore.org/workflows/github.com/mobinasri/flagger/UnionBedFiles https://dockstore.org/workflows/github.com/mobinasri/flagger/mergeCoverage https://dockstore.org/workflows/github.com/mobinasri/secphase/CorrectBam https://dockstore.org/workflows/github.com/mobinasri/secphase/Secphase https://dockstore.org/workflows/github.com/mr-eyes/genome-grist-CWL https://dockstore.org/workflows/github.com/mruffalo/cellranger-pipeline https://dockstore.org/workflows/github.com/mruffalo/chromvar-cwl/chromvar https://dockstore.org/workflows/github.com/mvdbeek/bioinformatics-workflows/salmon-proof-of-concept-galaxy https://dockstore.org/workflows/github.com/nanoporegenomics/hpp_production_workflows/YakAsmStatsNoTrio https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/bcftools https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/bedtoolsMapwf https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/cardEndToEndVcfMethyl https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/dvMargin https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/glnexus https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/hapdiffWorkflow https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/jasmine https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/marginPhase https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/minimapWorkflow https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/modbamtools https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/modkit https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/pepperMarginDvWorkflow https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/pmdvChrsWorkflow https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/regionalMethylationwf https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/shasta https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/shastaHapdup https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/snifflesWorkflow https://dockstore.org/workflows/github.com/nanoporegenomics/wambam/wambam https://dockstore.org/workflows/github.com/ncsa/phyloflow/phyloflow_standalone https://dockstore.org/workflows/github.com/neranjan007/GAS_identification/gas_identification_wf2 https://dockstore.org/workflows/github.com/neranjan007/GBS_Identification_and_Typing/BLAST_virulence https://dockstore.org/workflows/github.com/neranjan007/GBS_Identification_and_Typing/GBS_Identification_and_Typing https://dockstore.org/workflows/github.com/neranjan007/scan-n-trim/Scan-n-Trim https://dockstore.org/workflows/github.com/neranjan007/scan-n-trim/scan-n-trim https://dockstore.org/workflows/github.com/neurogenomics/WDLtest/WDLtest https://dockstore.org/workflows/github.com/neurogenomics/wdl-scflow https://dockstore.org/workflows/github.com/nextflow-io/rnaseq-nf https://dockstore.org/workflows/github.com/nextstrain/ncov https://dockstore.org/workflows/github.com/nextstrain/ncov/genbank_ingest https://dockstore.org/workflows/github.com/nextstrain/ncov/gisaid_ingest https://dockstore.org/workflows/github.com/nextstrain/ncov/ncov https://dockstore.org/workflows/github.com/nextstrain/wdl-debug https://dockstore.org/workflows/github.com/nf-core/airrflow https://dockstore.org/workflows/github.com/nf-core/ampliseq https://dockstore.org/workflows/github.com/nf-core/atacseq https://dockstore.org/workflows/github.com/nf-core/bacass https://dockstore.org/workflows/github.com/nf-core/bamtofastq https://dockstore.org/workflows/github.com/nf-core/bcellmagic https://dockstore.org/workflows/github.com/nf-core/callingcards https://dockstore.org/workflows/github.com/nf-core/chipseq https://dockstore.org/workflows/github.com/nf-core/circdna https://dockstore.org/workflows/github.com/nf-core/circrna https://dockstore.org/workflows/github.com/nf-core/clipseq https://dockstore.org/workflows/github.com/nf-core/coproid https://dockstore.org/workflows/github.com/nf-core/createpanelrefs https://dockstore.org/workflows/github.com/nf-core/createrefs https://dockstore.org/workflows/github.com/nf-core/createtaxdb https://dockstore.org/workflows/github.com/nf-core/crisprseq https://dockstore.org/workflows/github.com/nf-core/cutandrun https://dockstore.org/workflows/github.com/nf-core/datasync https://dockstore.org/workflows/github.com/nf-core/ddamsproteomics https://dockstore.org/workflows/github.com/nf-core/deepmodeloptim https://dockstore.org/workflows/github.com/nf-core/deepvariant https://dockstore.org/workflows/github.com/nf-core/demo https://dockstore.org/workflows/github.com/nf-core/demultiplex https://dockstore.org/workflows/github.com/nf-core/denovotranscript https://dockstore.org/workflows/github.com/nf-core/detaxizer https://dockstore.org/workflows/github.com/nf-core/diaproteomics https://dockstore.org/workflows/github.com/nf-core/differentialabundance https://dockstore.org/workflows/github.com/nf-core/drop https://dockstore.org/workflows/github.com/nf-core/drugresponseeval https://dockstore.org/workflows/github.com/nf-core/dualrnaseq https://dockstore.org/workflows/github.com/nf-core/eager https://dockstore.org/workflows/github.com/nf-core/epitopeprediction https://dockstore.org/workflows/github.com/nf-core/evexplorer https://dockstore.org/workflows/github.com/nf-core/exoseq https://dockstore.org/workflows/github.com/nf-core/fastqrepair https://dockstore.org/workflows/github.com/nf-core/fastquorum https://dockstore.org/workflows/github.com/nf-core/fetchngs https://dockstore.org/workflows/github.com/nf-core/funcscan https://dockstore.org/workflows/github.com/nf-core/genomeassembler https://dockstore.org/workflows/github.com/nf-core/genomeqc https://dockstore.org/workflows/github.com/nf-core/genomeskim https://dockstore.org/workflows/github.com/nf-core/gwas https://dockstore.org/workflows/github.com/nf-core/hgtseq https://dockstore.org/workflows/github.com/nf-core/hic https://dockstore.org/workflows/github.com/nf-core/hicar https://dockstore.org/workflows/github.com/nf-core/hlatyping https://dockstore.org/workflows/github.com/nf-core/imcyto https://dockstore.org/workflows/github.com/nf-core/isoseq https://dockstore.org/workflows/github.com/nf-core/kmermaid https://dockstore.org/workflows/github.com/nf-core/lncpipe https://dockstore.org/workflows/github.com/nf-core/mag https://dockstore.org/workflows/github.com/nf-core/magmap https://dockstore.org/workflows/github.com/nf-core/marsseq https://dockstore.org/workflows/github.com/nf-core/mcmicro https://dockstore.org/workflows/github.com/nf-core/meerpipe https://dockstore.org/workflows/github.com/nf-core/metaboigniter https://dockstore.org/workflows/github.com/nf-core/metapep https://dockstore.org/workflows/github.com/nf-core/metatdenovo https://dockstore.org/workflows/github.com/nf-core/methylarray https://dockstore.org/workflows/github.com/nf-core/methylong https://dockstore.org/workflows/github.com/nf-core/methylseq https://dockstore.org/workflows/github.com/nf-core/mhcquant https://dockstore.org/workflows/github.com/nf-core/mitodetect https://dockstore.org/workflows/github.com/nf-core/molkart https://dockstore.org/workflows/github.com/nf-core/multiplesequencealign https://dockstore.org/workflows/github.com/nf-core/nanoseq https://dockstore.org/workflows/github.com/nf-core/nanostring https://dockstore.org/workflows/github.com/nf-core/nascent https://dockstore.org/workflows/github.com/nf-core/neutronstar https://dockstore.org/workflows/github.com/nf-core/oncoanalyser https://dockstore.org/workflows/github.com/nf-core/pacvar https://dockstore.org/workflows/github.com/nf-core/pairgenomealign https://dockstore.org/workflows/github.com/nf-core/pangenome https://dockstore.org/workflows/github.com/nf-core/pathogensurveillance https://dockstore.org/workflows/github.com/nf-core/pgdb https://dockstore.org/workflows/github.com/nf-core/phageannotator https://dockstore.org/workflows/github.com/nf-core/phaseimpute https://dockstore.org/workflows/github.com/nf-core/phyloplace https://dockstore.org/workflows/github.com/nf-core/pixelator https://dockstore.org/workflows/github.com/nf-core/proteinfamilies https://dockstore.org/workflows/github.com/nf-core/proteinfold https://dockstore.org/workflows/github.com/nf-core/proteomicslfq https://dockstore.org/workflows/github.com/nf-core/quantms https://dockstore.org/workflows/github.com/nf-core/radseq https://dockstore.org/workflows/github.com/nf-core/rangeland https://dockstore.org/workflows/github.com/nf-core/raredisease https://dockstore.org/workflows/github.com/nf-core/readsimulator https://dockstore.org/workflows/github.com/nf-core/references https://dockstore.org/workflows/github.com/nf-core/reportho https://dockstore.org/workflows/github.com/nf-core/riboseq https://dockstore.org/workflows/github.com/nf-core/rnadnavar https://dockstore.org/workflows/github.com/nf-core/rnafusion https://dockstore.org/workflows/github.com/nf-core/rnaseq https://dockstore.org/workflows/github.com/nf-core/rnasplice https://dockstore.org/workflows/github.com/nf-core/rnavar https://dockstore.org/workflows/github.com/nf-core/sammyseq https://dockstore.org/workflows/github.com/nf-core/sarek https://dockstore.org/workflows/github.com/nf-core/scdownstream https://dockstore.org/workflows/github.com/nf-core/scflow https://dockstore.org/workflows/github.com/nf-core/scnanoseq https://dockstore.org/workflows/github.com/nf-core/scrnaseq https://dockstore.org/workflows/github.com/nf-core/seqinspector https://dockstore.org/workflows/github.com/nf-core/smrnaseq https://dockstore.org/workflows/github.com/nf-core/spatialtranscriptomics https://dockstore.org/workflows/github.com/nf-core/spatialvi https://dockstore.org/workflows/github.com/nf-core/spatialxe https://dockstore.org/workflows/github.com/nf-core/spinningjenny https://dockstore.org/workflows/github.com/nf-core/ssds https://dockstore.org/workflows/github.com/nf-core/stableexpression https://dockstore.org/workflows/github.com/nf-core/taxprofiler https://dockstore.org/workflows/github.com/nf-core/tbanalyzer https://dockstore.org/workflows/github.com/nf-core/testpipeline https://dockstore.org/workflows/github.com/nf-core/tfactivity https://dockstore.org/workflows/github.com/nf-core/troughgraph https://dockstore.org/workflows/github.com/nf-core/tumourevo https://dockstore.org/workflows/github.com/nf-core/variantbenchmarking https://dockstore.org/workflows/github.com/nf-core/variantcatalogue https://dockstore.org/workflows/github.com/nf-core/vipr https://dockstore.org/workflows/github.com/nf-core/viralintegration https://dockstore.org/workflows/github.com/nf-core/viralrecon https://dockstore.org/workflows/github.com/niccw/wdl-rsemBuildRef/RSEM_build_reference https://dockstore.org/workflows/github.com/nicolecalamari/BAF/BAF https://dockstore.org/workflows/github.com/nikhil777shingte/long-read-pipelines/ONTAssembleWithCanu https://dockstore.org/workflows/github.com/nikhil777shingte/long-read-pipelines/ONTAssembleWithCanuAdaptiveSampling https://dockstore.org/workflows/github.com/nikhil777shingte/long-read-pipelines/RunCrispy https://dockstore.org/workflows/github.com/nivasquez/toolkitForSubsetDownsampleBam/toolkitForSubsetDownsampleBam https://dockstore.org/workflows/github.com/nolwarre/MitoHiFi-Workflow https://dockstore.org/workflows/github.com/nolwarre/ScatteredWDL https://dockstore.org/workflows/github.com/nolwarre/ShastaWorkflow/Shasta https://dockstore.org/workflows/github.com/nolwarre/ShastaWorkflow/minimap2 https://dockstore.org/workflows/github.com/nolwarre/WDL-CI-actions/HelloWorld_wdl https://dockstore.org/workflows/github.com/notestaff/dockstore-tool-cms2/dockstore-tool-cms2-notestaff https://dockstore.org/workflows/github.com/ohsu-comp-bio/vrs-annotator/VRSAnnotator https://dockstore.org/workflows/github.com/oicr-gsi/wgsPipeline/wgsPipeline https://dockstore.org/workflows/github.com/omics-x/imputedvcffiltering https://dockstore.org/workflows/github.com/pathogen-genomics/integrate-covidnet/IntegrateCOVIDNet https://dockstore.org/workflows/github.com/pathogen-genomics/usher-public-workflow/publicTreeSamplePlacement https://dockstore.org/workflows/github.com/paulocilasjr/galaxy_workflows https://dockstore.org/workflows/github.com/phuwanat/SBayesRC_main https://dockstore.org/workflows/github.com/phuwanat/SBayesRC_prs https://dockstore.org/workflows/github.com/phuwanat/SBayesRC_tune https://dockstore.org/workflows/github.com/phuwanat/annotateRsid_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/check_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/clean_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/concat_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/dropGT_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/filterR2_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/filter_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/getSNPdup_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/merge_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/norm_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/plink2_score https://dockstore.org/workflows/github.com/phuwanat/postmerge_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/primed-file-conversion https://dockstore.org/workflows/github.com/phuwanat/primed-file-conversion/plink2_vcf2bed https://dockstore.org/workflows/github.com/phuwanat/primed-file-conversion/plink2_vcf2pgen https://dockstore.org/workflows/github.com/phuwanat/removestar_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/select_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/select_notabix_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/selectid_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/setid_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/sort_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/split_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/subsample_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/tabix_VCFs_wf https://dockstore.org/workflows/github.com/phuwanat/vcfToGds https://dockstore.org/workflows/github.com/phuwanat/vcfToGds/_wdl_checker https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/CoverageIntervals https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/MultiSampleMutect2 https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/Mutect2 https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/Mutect2_PoN https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/Mutect2_PoN_from_file https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/Mutect2_PoN_from_vcfs https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/PileupSummaries https://dockstore.org/workflows/github.com/phylyc/gatk4-somatic-snvs-indels/SummarizeCoverageIntervalsInBam https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/Absolute https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/AbsoluteExtractSolution https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/AbsoluteExtractSolution_Patient https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/AnnotateVariants https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CalculateContamination https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CollectAllelicCounts https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CollectCoveredRegions https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CollectReadCounts https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CreateAFonlyVCF https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CreateAFonlyVCFfromFile https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CreateMutect2PanelOfNormals https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/CreateReadCountPanelOfNormals https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/MultiSampleSomaticWorkflow https://dockstore.org/workflows/github.com/phylyc/somatic_workflow/SelectPileupSummaries https://dockstore.org/workflows/github.com/pstocker2024/cellprofiler-on-Terra/cytomining https://dockstore.org/workflows/github.com/qatest135/cwlbad https://dockstore.org/workflows/github.com/qatest135/cwltest https://dockstore.org/workflows/github.com/qatest135/nocwlversion https://dockstore.org/workflows/github.com/qinqian/ctat-mutations/ctat_mutations https://dockstore.org/workflows/github.com/qinqian/ctat-mutations/hg38_ctat_mutations https://dockstore.org/workflows/github.com/qinqian/depmap_omics/Manta_SomaticSV https://dockstore.org/workflows/github.com/qinqian/depmap_omics/RNA_pipeline https://dockstore.org/workflows/github.com/qinqian/depmap_omics/RNA_stranded_rsem_rnaseqc2 https://dockstore.org/workflows/github.com/qinqian/depmap_omics/annotate_variants https://dockstore.org/workflows/github.com/qinqian/depmap_omics/bcftools_setGT https://dockstore.org/workflows/github.com/qinqian/depmap_omics/cnn-variant-filter https://dockstore.org/workflows/github.com/qinqian/depmap_omics/hgvs https://dockstore.org/workflows/github.com/qinqian/depmap_omics/manta_annot https://dockstore.org/workflows/github.com/qinqian/depmap_omics/omics_post_mutect2 https://dockstore.org/workflows/github.com/qinqian/depmap_omics/opencravat https://dockstore.org/workflows/github.com/qinqian/depmap_omics/opencravat_dm https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rna_index https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rna_mutation https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rna_seq_strand https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rnaseq_mutect2_tumor_only https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rsem_aggregate_results https://dockstore.org/workflows/github.com/qinqian/depmap_omics/rsem_depmap https://dockstore.org/workflows/github.com/qinqian/depmap_omics/telomere https://dockstore.org/workflows/github.com/qinqian/depmap_omics/vcf_to_depmap https://dockstore.org/workflows/github.com/quito418/UG_TrimAlignSort/UG_trimalignsort https://dockstore.org/workflows/github.com/ranlib/create_fastq_qc_report/create_fastq_qc_report https://dockstore.org/workflows/github.com/ranlib/fastq_qc/centrifuge https://dockstore.org/workflows/github.com/ranlib/fastq_qc/fastq_qc https://dockstore.org/workflows/github.com/ranlib/make_table https://dockstore.org/workflows/github.com/ranlib/make_table/pivot_table https://dockstore.org/workflows/github.com/ranlib/nanopore/ONT_assembly_with_flye https://dockstore.org/workflows/github.com/ranlib/nanopore/ont_dorado https://dockstore.org/workflows/github.com/ranlib/nanopore/ont_guppy_cpu_dir https://dockstore.org/workflows/github.com/ranlib/nanopore/ont_guppy_gpu https://dockstore.org/workflows/github.com/ranlib/target/centrifuge https://dockstore.org/workflows/github.com/ranlib/target/kraken2 https://dockstore.org/workflows/github.com/ranlib/target/target https://dockstore.org/workflows/github.com/ratschlab/tools-cwl-workflow-experiments https://dockstore.org/workflows/github.com/rcorty/extract-NLRC4/NLRC4_processing https://dockstore.org/workflows/github.com/rcorty/warp/VUMCRegenie https://dockstore.org/workflows/github.com/rdshear/netseq https://dockstore.org/workflows/github.com/rdshear/netseq-to-changepoint https://dockstore.org/workflows/github.com/rdshear/netseq/_wdl_checker https://dockstore.org/workflows/github.com/reinisj/ismb2024_dockstore_test https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/AlleleFoldChange https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/Bam2Junction https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/ClusterJunctions https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CombineRNASeqc2Files https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/ConcatVcfFiles https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/ConvertPlinkToVcf https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CreateParticipantSampleSets https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CreateRNASeqQCSampleName https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CreateSampleParticipantMap https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CrossCheckSample https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CrossSetAlleleFoldChange https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/CrosscheckDataWF https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/Cutadapt https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/FastQTL https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/FastQTLAnnotate https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/FingerprintBam https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/GetASECount https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/GetCromwellLabels https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/GetGeneId https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/GetPEERFactors https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/GetString https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/IdentifySample https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/KallistoIndexStep1 https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/KallistoQuant https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/LoadPicardMetrics https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/MarkDupsAndCountReads https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/MergeVcfFiles https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/PrepareAnnotationFiles https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/PrepareCovariates https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/PrepareExpressionData https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/RenameVcfSamples https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/ShrinkVcf https://dockstore.org/workflows/github.com/richardslab/gtex-pipeline/sQTLAnalysis https://dockstore.org/workflows/github.com/rickymagner/healthomics-workflows/EfficientDV https://dockstore.org/workflows/github.com/rishimp/gatk4-data-processing/Processing-For-Variant-Discovery-Dec-08-2019 https://dockstore.org/workflows/github.com/rlorigro/dbg_compare_wdl/convert_ggcat_fasta_to_gfa https://dockstore.org/workflows/github.com/rlorigro/dbg_compare_wdl/get_random_intervals https://dockstore.org/workflows/github.com/rlorigro/dbg_compare_wdl/merge_samples_by_intervals https://dockstore.org/workflows/github.com/rlorigro/dbg_compare_wdl/profile_dbg https://dockstore.org/workflows/github.com/rlorigro/dipcall_asm10/dipcall_asm10 https://dockstore.org/workflows/github.com/rlorigro/hapslap/PBSV https://dockstore.org/workflows/github.com/rlorigro/sv_merge/BcftoolsMergeNoDuplicatesSingleCaller https://dockstore.org/workflows/github.com/rlorigro/sv_merge/GraphEvaluation https://dockstore.org/workflows/github.com/rlorigro/sv_merge/VcfdistAndOverlapMetricsEvaluation https://dockstore.org/workflows/github.com/rlorigro/sv_merge/VcfdistEvaluation https://dockstore.org/workflows/github.com/rlorigro/sv_merge/bcftools_collapse https://dockstore.org/workflows/github.com/rlorigro/sv_merge/clean_vcf https://dockstore.org/workflows/github.com/rlorigro/sv_merge/fill_vcf_ref_alleles_from_fasta https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_annotate https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_annotate_scattered https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_annotate_scatttered https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_filter https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_merge https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_merge_heaptrack https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_merge_scattered https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_merge_valgrind https://dockstore.org/workflows/github.com/rlorigro/sv_merge/hapestry_validate https://dockstore.org/workflows/github.com/rlorigro/sv_merge/multi_annotate https://dockstore.org/workflows/github.com/rlorigro/sv_merge/samtools_merge https://dockstore.org/workflows/github.com/rlorigro/sv_merge/subset_csv_samples_using_vcf https://dockstore.org/workflows/github.com/rlorigro/sv_merge/subset_n_samples_from_vcf https://dockstore.org/workflows/github.com/roohy/anvil_admixture_test/AdmixtureTest https://dockstore.org/workflows/github.com/ruochiz/epi-SHARE-seq-pipeline/rz_test_star_solo https://dockstore.org/workflows/github.com/sadams-lab/workflow_nanopore-preprocess https://dockstore.org/workflows/github.com/saimukund20/samtools_subset https://dockstore.org/workflows/github.com/saimukund20/wdl_samtools.manta https://dockstore.org/workflows/github.com/sam-baird/nfpracticum https://dockstore.org/workflows/github.com/sam-baird/public_health_bioinformatics/TheiaProk_FASTA_PHB https://dockstore.org/workflows/github.com/sam-baird/public_health_bioinformatics/TheiaProk_Illumina_PE_PHB https://dockstore.org/workflows/github.com/sam-baird/public_health_bioinformatics/TheiaProk_Illumina_SE_PHB https://dockstore.org/workflows/github.com/sam-baird/public_health_bioinformatics/TheiaProk_ONT_PHB https://dockstore.org/workflows/github.com/sam-baird/public_health_bioinformatics/TheiaValidate_PHB https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/CellBender https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Cellranger https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Cellranger_atac_create_reference https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Cellranger_create_reference https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Cellranger_vdj_create_reference https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Cumulus https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Demultiplexing https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/GeoMx_dcc_to_count_matrix https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/GeoMx_fastq_to_dcc https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/STARsolo https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/STARsolo_create_reference https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Smart-Seq2_create_reference https://dockstore.org/workflows/github.com/samanthahv/cumulus-fork-test/Spaceranger https://dockstore.org/workflows/github.com/sashaaero/actions-test/TEST https://dockstore.org/workflows/github.com/sbg/sbg_dockstore_tools/gtex-rna-seq-pipeline https://dockstore.org/workflows/github.com/sbg/sbg_dockstore_tools/icgc_pcawg_dkfz_embl_sbg_modified https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/T2T_alignment https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bcftools_stats https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bcftools_stats_region https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bcftools_stats_samples https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bcftools_view_subset https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bgzip_bcftools_index https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/bgzip_tabix https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/combine_mv_tables https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/concat_vcfs_chromosome https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/concatenate_files https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/download_aspera https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/filter_ac_variants https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/filter_af_variants https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/generate_genomics_db https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/get_pass_records https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/gunzip https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/haplotype_calling_chrom https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/joint_calling_interval https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/liftover https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/local_ancestry_analysis https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/mendelian_analysis https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/subset_vcf_with_bed https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/tabix https://dockstore.org/workflows/github.com/schatzlab/t2t-variants/variant_recalibration https://dockstore.org/workflows/github.com/senthilcaesar/luna-cwl https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow-GATK-4.1.0.0/GATK_4_1_0_0_data_pre_processing_workflow https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Broad-Best-Practice-Germline-snps-and-indels-variant-calling-CWL1.0-workflow-GATK-4.1.0.0 https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Broad-Best-Practice-Somatic-CNV-Workflows/GATK-Somatic-CNV-Pair-Workflow https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Broad-Best-Practice-Somatic-CNV-Workflows/GATK-Somatic-CNV-Panel-Workflow https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Broad-Best-Practice-rnaseq-germline-snps-indels-CWL1.0-workflow https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/GENESIS-Aggregate-association-testing https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/GENESIS-Single-variant-association-testing https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/GENESIS-Sliding-window-association-testing https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/Null-Model https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/VCF-to-GDS https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/uw-genesis-topmed-cwl/UW_GAC_GENESIS_Singe_Variant_Association_Workflow https://dockstore.org/workflows/github.com/sevenbridges-openworkflows/uw-genesis-topmed-cwl/UW_GAC_GENESIS_VCF_to_GDS https://dockstore.org/workflows/github.com/shadizaheri/FingerprintCheck https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_backend_configuration https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_bcftools_stats https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_cohort_analysis https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_concat_vcf https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_deepvariant https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_glnexus https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_hiphase https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_main https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_mosdepth https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_pbsv_call https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_pbsv_discover https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_pharmcat https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_phase_vcf https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_samtools_fasta https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_whatshap_haplotag https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_whatshap_phase https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_whatshap_stats https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_WDL_zip_index_vcf https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_sample_analysis https://dockstore.org/workflows/github.com/shadizaheri/HiFi-human-WGS-WDL/HiFi_human_WGS_tertiary_analysis https://dockstore.org/workflows/github.com/shadizaheri/bam_contamination https://dockstore.org/workflows/github.com/shadizaheri/bam_contamination/in_sillico_mixture_0262024 https://dockstore.org/workflows/github.com/shadizaheri/qucik_tools https://dockstore.org/workflows/github.com/shadizaheri/quick_tools https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/InsertSizeMetrics https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/downsample_bam_reads https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/fasta_to_bam https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/fastq_to_bam_single_sample https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/fastq_to_ubam https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/fastqc https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/read_group_with_picard https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/split_vcf_hom_ref https://dockstore.org/workflows/github.com/shadizaheri/quick_tools/split_vcf_hom_ref_transform https://dockstore.org/workflows/github.com/shadrinams/wdl-bootcamp-june https://dockstore.org/workflows/github.com/shantalalhabib/ISMB2024 https://dockstore.org/workflows/github.com/shaze/GS/spn-nf https://dockstore.org/workflows/github.com/shaze/GS/strepA-nf https://dockstore.org/workflows/github.com/shaze/GS/strepB-nf https://dockstore.org/workflows/github.com/shbrief/1_mutect1_pon https://dockstore.org/workflows/github.com/shbrief/1_mutect1_variants_calling https://dockstore.org/workflows/github.com/shbrief/1_purecn_intervalfile https://dockstore.org/workflows/github.com/shbrief/2_purecn_coverage https://dockstore.org/workflows/github.com/shbrief/3_purecn_normaldb https://dockstore.org/workflows/github.com/shbrief/4_purecn_purecn https://dockstore.org/workflows/github.com/shbrief/5_purecn_dx https://dockstore.org/workflows/github.com/shbrief/biobakery_workflows https://dockstore.org/workflows/github.com/sheilagaynor/STAAR_workflow https://dockstore.org/workflows/github.com/sheilagaynor/staar_slim https://dockstore.org/workflows/github.com/shengqh/qc-analysis-pipeline/SingleSampleQc https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/Multi-Paired-FASTQ-to-Multi-Unmapped-BAM https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/Multi-Paired-FASTQ-to-Unmapped-BAM https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/Paired-FASTQ-to-Unmapped-BAM https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/VUMCCramToUnmappedCram https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/VUMCMultiPairedFASTQToMultiUnmappedBAM https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/VUMCMultiPairedFASTQToSingleUnmappedBAM https://dockstore.org/workflows/github.com/shengqh/seq-format-conversion/VUMCPairedFASTQToUnmappedCram https://dockstore.org/workflows/github.com/shengqh/warp/CombineGvsChromosome https://dockstore.org/workflows/github.com/shengqh/warp/JointGenotypingByChromosomePartOne https://dockstore.org/workflows/github.com/shengqh/warp/JointGenotypingByChromosomePartTwo https://dockstore.org/workflows/github.com/shengqh/warp/ReblockGVCF https://dockstore.org/workflows/github.com/shengqh/warp/VUMCAGDPhecode https://dockstore.org/workflows/github.com/shengqh/warp/VUMCAnnovar https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBamToCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBed2GDS https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBed2HailMatrix https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBedInfo https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBgen2HailMatrix https://dockstore.org/workflows/github.com/shengqh/warp/VUMCBigQueryDemo https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCollectWgsMetrics https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCombineFiles https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCombineIlluminaQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCombineQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCContamination https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCopyBamFile https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCopyFile https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCramQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCramQCCombined https://dockstore.org/workflows/github.com/shengqh/warp/VUMCCramReads https://dockstore.org/workflows/github.com/shengqh/warp/VUMCDeleteBam https://dockstore.org/workflows/github.com/shengqh/warp/VUMCDeleteFiles https://dockstore.org/workflows/github.com/shengqh/warp/VUMCExomeGermlineSingleSampleFromFastq https://dockstore.org/workflows/github.com/shengqh/warp/VUMCExomeReprocessAlignedCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCExtractRegionAGD https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFastqQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFastqToAlignedCramNoBamQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFastqToAlignedCramNoBamQCFast https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFastqToUnmappedCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFileSize https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFilterPassVariantsInPgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFilterPassVariantsInVcf https://dockstore.org/workflows/github.com/shengqh/warp/VUMCFixCramReference https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGenePhewas https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGenotypePCA https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGetFilesizeOfList https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGetFilesizeOfListLarge https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGetGeneLocus https://dockstore.org/workflows/github.com/shengqh/warp/VUMCGunzippedMd5 https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHailMTIncludeSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHailMatrix2Vcf https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHailMatrixExtractRegions https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHailMatrixExtractSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHailMatrixInfo https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHaplotypeCaller https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHaplotypecallerReblock https://dockstore.org/workflows/github.com/shengqh/warp/VUMCHaplotypecallerReblockMoveResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCIlluminaCoverage https://dockstore.org/workflows/github.com/shengqh/warp/VUMCLinearAssociation https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMappedCramQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMd5 https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMergePgenFiles https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMergeUnmappedBamWithCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveFastqToBamResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveFastqToCramResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveFile https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveHaplotypecallerResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveHyplotypecallerResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveSingleSampleWESResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCMoveSingleSampleWGSResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPgenToBgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPhewas https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2 https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2BedToBgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2BedToPgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2Bgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2Filter https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2FilterRegion https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlink2FilterSample https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlinkFilterRegion https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPlinkIncludeSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPrepareAgdPgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPrepareAgdVcf https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPrepareGeneGenotype https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPrepareGeneGenotypeWorkflow https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPrepareGenotypeData https://dockstore.org/workflows/github.com/shengqh/warp/VUMCPreparePhenotype https://dockstore.org/workflows/github.com/shengqh/warp/VUMCQCFilterAndMergePgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCReadsInBed https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRealignCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4 https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4Chromosomes https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4Task1CreateCohortPsam https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4Task2PrepareTestPgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4Task3PrepareModelPgen https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4Task4Regenie https://dockstore.org/workflows/github.com/shengqh/warp/VUMCRegenie4TaskAll https://dockstore.org/workflows/github.com/shengqh/warp/VUMCReprocessAlignedCramNoBamQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCSamHeader https://dockstore.org/workflows/github.com/shengqh/warp/VUMCUnmappedBamToAlignedBam https://dockstore.org/workflows/github.com/shengqh/warp/VUMCUnmappedBamToAlignedCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMCUnmappedBamToAlignedCramMoveResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCUnmappedBamToAlignedCramNoBamQC https://dockstore.org/workflows/github.com/shengqh/warp/VUMCUnmappedBamToAlignedCramNoBamQCMoveResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVariantCalling https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVariantCallingMoveResult https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcf2GDS https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcf2HailMatrix https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfExcludeSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfExtractRegions https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfExtractSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfIncludeSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfIndex https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfInfo https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfMoveFiles https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfNumVariants https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVcfRenameSamples https://dockstore.org/workflows/github.com/shengqh/warp/VUMCVirus_hhv6_recon https://dockstore.org/workflows/github.com/shengqh/warp/VUMCWholeGenomeGermlineSingleSampleFromFastq https://dockstore.org/workflows/github.com/shengqh/warp/VUMCWholeGenomeGermlineSingleSampleFromMappedCram https://dockstore.org/workflows/github.com/shengqh/warp/VUMC_overlappingVariantList https://dockstore.org/workflows/github.com/shengqh/warp/VUMC_vcftools828Filters https://dockstore.org/workflows/github.com/shengqh/warp/WholeGenomeGermlineSingleSampleFromCram https://dockstore.org/workflows/github.com/shlokanegi/SegMeth/SegMeth https://dockstore.org/workflows/github.com/shlokanegi/denovo_smallvars/denovo_smallvars https://dockstore.org/workflows/github.com/shlokanegi/merge_VCFs_wf https://dockstore.org/workflows/github.com/shlokanegi/modbam_calcMeth_wf/modbam_calcmeth https://dockstore.org/workflows/github.com/shukwong/gwas-pipelines/meta_analysis_workflow https://dockstore.org/workflows/github.com/shukwong/gwas-pipelines/preprocess_gwas_data https://dockstore.org/workflows/github.com/shukwong/gwas-pipelines/run_association_test https://dockstore.org/workflows/github.com/shukwong/gwas-pipelines/subset_meta_analysis https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_01_GatherSampleEvidence https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_02_EvidenceQC https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_03_TrainGCNV https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_04_GatherBatchEvidence https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_05_ClusterBatch https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_06_GenerateBatchMetrics https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_07_FilterBatch https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_07a_FilterBatchSites https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_07b_PlotSVCountsPerSample https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_07c_FilterBatchSamples https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_08_MergeBatchSites https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_09_GenotypeBatch https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_09_SingleBatch_GenotypeBatch https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_10_RegenotypeCNVs https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_10_SingleBatch_RegenotypeCNVs https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_11_MakeCohortVcf https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_11_SingleBatch_MakeCohortVcf https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_12_AnnotateVcf https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_12_SingleBatch_AnnotateVcf https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineBatch_extra_FilterOutlierSamples https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineSingleSample.wdl https://dockstore.org/workflows/github.com/shyamrav/gatk-sv/GATKSVPipelineSingleSampleExperimental https://dockstore.org/workflows/github.com/shyamrav/warp/AS_VQSR https://dockstore.org/workflows/github.com/shyamrav/warp/CramToSubsetBam https://dockstore.org/workflows/github.com/shyamrav/warp/ReblockGVCFs https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeFromFastq https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeGermlineBetterMultipleFastqDragen https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeGermlineFastqToUBamMultipleDragen https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeGermlineMultipleReprocess https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/shyamrav/warp/WholeGenomeReprocessing https://dockstore.org/workflows/github.com/sidwekhande/atac-seq-pipeline/ATAC-seq https://dockstore.org/workflows/github.com/sidwekhande/chip-seq-pipeline2/CHIP-seq https://dockstore.org/workflows/github.com/sidwekhande/gtex-pipeline/KallistoQuant https://dockstore.org/workflows/github.com/sidwekhande/rna-seq-pipeline/RNA-seq https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-7488045/Ginny-7488045 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-7899344/Ginny-7899344 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-7899426/Ginny-7899426 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-8050015/Ginny-8050015 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-8064391/Ginny-8064391 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-8066038/Ginny-8066038 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-8226744/Ginny-8226744 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-9607675/Ginny-9607675 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-9609145/Ginny-9609145 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-9609498/Ginny-9609498 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-9609499/Ginny-9609499 https://dockstore.org/workflows/github.com/smc-rna-challenge/Ginny-9609501/Ginny-9609501 https://dockstore.org/workflows/github.com/smc-rna-challenge/beccyl-7238196/beccyl-7238196 https://dockstore.org/workflows/github.com/smc-rna-challenge/beccyl-7238196/smc-rna-challenge-beccyl-7238196 https://dockstore.org/workflows/github.com/smc-rna-challenge/beccyl-7997358/beccyl-7997358 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-7185743/bhaas-7185743 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-7185755/bhaas-7185755 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8023084/bhaas-8023084 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8277921/bhaas-8277921 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8277922/bhaas-8277922 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8281648/bhaas-8281648 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8639678/bhaas-8639678 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8639697/bhaas-8639697 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-8639700/bhaas-8639700 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-9609496/bhaas-9609496 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-9609497/bhaas-9609497 https://dockstore.org/workflows/github.com/smc-rna-challenge/bhaas-9610021/bhaas-9610021 https://dockstore.org/workflows/github.com/smc-rna-challenge/cndgf-7252845/cndgf-7252845 https://dockstore.org/workflows/github.com/smc-rna-challenge/cndgf-7255230/cndgf-7255230 https://dockstore.org/workflows/github.com/smc-rna-challenge/cndgf-7378934/cndgf-7378934 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-8040408/genomehacker-8040408 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-8693880/genomehacker-8693880 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-9610017/genomehacker-9610017 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-9610018/genomehacker-9610018 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-9610019/genomehacker-9610019 https://dockstore.org/workflows/github.com/smc-rna-challenge/genomehacker-9610020/genomehacker-9610020 https://dockstore.org/workflows/github.com/smc-rna-challenge/jasper1918-8049087/jasper1918-8049087 https://dockstore.org/workflows/github.com/smc-rna-challenge/jasper1918-8114525/jasper1918-8114525 https://dockstore.org/workflows/github.com/smc-rna-challenge/jasper1918-8399080/jasper1918-8399080 https://dockstore.org/workflows/github.com/smc-rna-challenge/jasper1918-9610272/jasper1918-9610272 https://dockstore.org/workflows/github.com/smc-rna-challenge/jasper1918-9610273/jasper1918-9610273 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-8517255/jeltje-8517255 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-8545061/jeltje-8545061 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9603865/jeltje-9603865 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9604399/jeltje-9604399 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9604426/jeltje-9604426 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9605357/jeltje-9605357 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9605360/jeltje-9605360 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9605581/jeltje-9605581 https://dockstore.org/workflows/github.com/smc-rna-challenge/jeltje-9610378/jeltje-9610378 https://dockstore.org/workflows/github.com/smc-rna-challenge/jliu-7252855/jliu-7252855 https://dockstore.org/workflows/github.com/smc-rna-challenge/kellrott-8473425/kellrott-8473425 https://dockstore.org/workflows/github.com/smc-rna-challenge/linuxpham-7363252/linuxpham-7363252 https://dockstore.org/workflows/github.com/smc-rna-challenge/linuxpham-7367548/linuxpham-7367548 https://dockstore.org/workflows/github.com/smc-rna-challenge/thucmi-9604224/thucmi-9604224 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-7269246/tnv-7269246 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-7546453/tnv-7546453 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8289963/tnv-8289963 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8289993/tnv-8289993 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8295762/tnv-8295762 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8614991/tnv-8614991 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8614998/tnv-8614998 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-8615001/tnv-8615001 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-9609147/tnv-9609147 https://dockstore.org/workflows/github.com/smc-rna-challenge/tnv-9609148/tnv-9609148 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-7150823/zhanghj-7150823 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-7150898/zhanghj-7150898 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-7150917/zhanghj-7150917 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8024234/zhanghj-8024234 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8057844/zhanghj-8057844 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8071387/zhanghj-8071387 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8294423/zhanghj-8294423 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8294430/zhanghj-8294430 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8396900/zhanghj-8396900 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8399815/zhanghj-8399815 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8400011/zhanghj-8400011 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8555063/zhanghj-8555063 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8555064/zhanghj-8555064 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8555113/zhanghj-8555113 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8555114/zhanghj-8555114 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8639902/zhanghj-8639902 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8644607/zhanghj-8644607 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8644608/zhanghj-8644608 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-8649616/zhanghj-8649616 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-9609594/zhanghj-9609594 https://dockstore.org/workflows/github.com/smc-rna-challenge/zhanghj-9609644/zhanghj-9609644 https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Add_cellid_to_srt https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Add_doublet_info https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Doublet_calling https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Doublet_colletion https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Featureplot_genes https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/QC_plots https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Seurat_clustering_simple https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Seurat_multisample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Seurat_rPCA_integration https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/Seurat_single_sample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/SingleR_singleref https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/add_cellid_results_to_seurat https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/add_doubletinfo https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/clustering_n_pca_simple https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/end_to_end_multisample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/end_to_end_seurat_multi_sample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/end_to_end_seurat_single_sample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/end_to_end_seurat_single_sample_nomerging https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/end_to_end_seurat_singlesample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/filter_n_doublets https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/linear_chain_adddoublets_seurat https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/linear_chain_single_sample_seurat_doubletsadd https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/make_gene_featplots https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/multisample_seurat https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/multisample_seurat_doublet_singler https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/plot_qc https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/recluster_renorm_rerun_singleR https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/recluster_renormalize https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/rpca_integration https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/run_singleR_by_sample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_doublet https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_doublet_multi https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_gather_Doubletcall_multisample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_gather_doublet_singlesample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_gather_scsorter https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_gather_singleR https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_gather_singleR_bysample https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scatter_rpca https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scsorter_markerprediction https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/scsorter_run https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/seurat_counts_to_anndata https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/seurat_single_sample_nomerging https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/singleR_immune_nonimmune https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/singleR_immune_nonimmune_pipeline https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/single_sample_filtering_nd_doublets https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/single_sample_seurat https://dockstore.org/workflows/github.com/smk5g5/Single_cell_WDLworkflows/subset_renormalize_recluster https://dockstore.org/workflows/github.com/sph17/Scramble/SCRAMble https://dockstore.org/workflows/github.com/sph17/automop/automop https://dockstore.org/workflows/github.com/sph17/cfdna/CollectionInsertSize https://dockstore.org/workflows/github.com/sph17/cfdna/SubsettingReads https://dockstore.org/workflows/github.com/sph17/down-sampling/CollectWgsMetrics https://dockstore.org/workflows/github.com/sph17/down-sampling/Downsample https://dockstore.org/workflows/github.com/sph17/down-sampling/Downsampling_Pipeline https://dockstore.org/workflows/github.com/sph17/down-sampling/bamToFq_01 https://dockstore.org/workflows/github.com/sph17/down-sampling/collectCounts https://dockstore.org/workflows/github.com/sph17/down-sampling/collectOriginalReadCounts https://dockstore.org/workflows/github.com/sph17/down-sampling/compressCounts https://dockstore.org/workflows/github.com/sph17/down-sampling/countAndRandomSample_02 https://dockstore.org/workflows/github.com/sph17/down-sampling/countCoverage_05 https://dockstore.org/workflows/github.com/sph17/down-sampling/countCrams_06 https://dockstore.org/workflows/github.com/sph17/down-sampling/cramToBam https://dockstore.org/workflows/github.com/sph17/down-sampling/ds_pipeline_part1 https://dockstore.org/workflows/github.com/sph17/down-sampling/ds_pipeline_part2 https://dockstore.org/workflows/github.com/sph17/down-sampling/realign_03 https://dockstore.org/workflows/github.com/sph17/down-sampling/sortIndex_04 https://dockstore.org/workflows/github.com/sph17/gatk-scripts/ShardVcf https://dockstore.org/workflows/github.com/sph17/gatk-scripts/getPVR https://dockstore.org/workflows/github.com/sph17/kmer-count/CountKmers https://dockstore.org/workflows/github.com/sph17/loftee_plugin/AnnotateVEP https://dockstore.org/workflows/github.com/sph17/loftee_plugin/VEP_Hail https://dockstore.org/workflows/github.com/statgen/bravo-pipeline/bravo-pipeline https://dockstore.org/workflows/github.com/stevetsa/2018-ACMBCB-workshop https://dockstore.org/workflows/github.com/stevetsa/Metaphlan-ISBCGC-Dockstore https://dockstore.org/workflows/github.com/stevetsa/Metaphlan-SBCGC https://dockstore.org/workflows/github.com/stevetsa/Metaphlan-WDL https://dockstore.org/workflows/github.com/talkowski-lab/1kgp-gatk-sv-test/ExtractSampleSVEvidence https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-NIFS-v01 https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-extra-dev https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-extra-v01 https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-ht-v01 https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-mt-v01 https://dockstore.org/workflows/github.com/talkowski-lab/annotations/vep-annotate-hail-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-comphets-xlr-hom-var-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-variants-NIFS-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-variants-SNV-Indel-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-variants-SV-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-variants-single-NIFS-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/filter-clinical-variants-v01 https://dockstore.org/workflows/github.com/talkowski-lab/clinical-filtering/merge-clinical-variants-NIFS-v01 https://dockstore.org/workflows/github.com/talkowski-lab/cnv-validation/AoUArrayValidation https://dockstore.org/workflows/github.com/talkowski-lab/cnv-validation/AoUArrayValidationRerunFromRawMatrices https://dockstore.org/workflows/github.com/talkowski-lab/cnv-validation/AoUArrayValidationRerunSharded https://dockstore.org/workflows/github.com/talkowski-lab/count_variant_occurrence/get-cohort-af https://dockstore.org/workflows/github.com/talkowski-lab/dsmap https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/BinAndAnnotateGenome https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/CalcGenicDosageSensitivity https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/CalcSegmentDosageSensitivity https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/CountCnvsInBins https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/FilterMu https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/FilterVcf https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/PreprocessExternalBAMs https://dockstore.org/workflows/github.com/talkowski-lab/dsmap/TrainMuModel https://dockstore.org/workflows/github.com/talkowski-lab/gCNV-analysis-tools/AnnotateDeNovo https://dockstore.org/workflows/github.com/talkowski-lab/gCNV-analysis-tools/CheckPloidy https://dockstore.org/workflows/github.com/talkowski-lab/gCNV-analysis-tools/CheckSex https://dockstore.org/workflows/github.com/talkowski-lab/gCNV-analysis-tools/FixDCR https://dockstore.org/workflows/github.com/talkowski-lab/gCNV-analysis-tools/PlotDeNovoEvidence https://dockstore.org/workflows/github.com/talkowski-lab/gnomad-sv-v3-qc/MainVcfQc https://dockstore.org/workflows/github.com/talkowski-lab/outlier-exclusion/OutlierExclusion https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/ancestry-inference-hail-cohort-set-v01 https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/ancestry-inference-hail-mt-v01 https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/ancestry-inference-hail-v01 https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/liftover-hail https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/relatedness-hail-cohort-set-v01 https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/relatedness-hail-subset-samples-v01 https://dockstore.org/workflows/github.com/talkowski-lab/preprocessing/relatedness-hail-v01 https://dockstore.org/workflows/github.com/talkowski-lab/pzm/Classifier https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/AnnotateVEP https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/AnnotateVEP-Sharded-Single https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ConcatinatePlots https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/CountCrams https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/FilterRegionVCF https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/GenomicDisorders https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/GetShardInputs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/JointGenotyping_Eren https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/MergeGVCF https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/MergeVCFSamples https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/Mosaic https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/PEevidence https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/PEevidence_cohort https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/RDTest https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/RdVisualization https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ReformatGregor https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/Relatedness https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ResolveCTX https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/RunDeNovoSVs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/RunVisualizePlots https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/RunVisualizePlots_update https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/TinyResolve https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/TrainGCNV https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/add-info-to-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/addRGfromCRAM https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ancestry-inference-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ancestry-inference-hail-cohort-set https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/ancestry-inference-hail-mt https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-all-steps-tsv https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-hp-vaf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-mpc-loeuf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-noncoding https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-step-01-tsv https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotate-step-03-tsv https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/annotateVcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/bagging-pu https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/bagging-pu-cross-validation https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/bagging-pu-rf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/bagging-pu-rf-combined https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/check-known-variants https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/compress-hail-mt https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/convertPedSampleIDs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/cramToHaplotypeCaller https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/downsample-variants-tsv https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/estimateDPandPL https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/export-mt-to-vcf-array https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/export-vds-to-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-clinical-comphets-xlr-hom-var https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-clinical-variants https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-clinical-variants-NIFS https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-clinical-variants-SV https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-known-variants https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-prioritized-ht-to-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-rare-splice-impact-variants https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-rare-variants https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-rare-variants-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-ultra-rare-inherited-variants-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/filter-ultra-rare-parents-variants-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/flag-repetitive-regions https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/get-baf-in-bed https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/get-mis-ptv-syn-counts https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/get-terra-bucket-file-sizes https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/get-terra-submission-sizes https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/get-wgs-pipeline-stats https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/getPVR https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/index-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/interleaved-fastq-to-paired-fastq-output https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/liftoverVCF https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/make-trio-sample-files https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/merge-HTs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/merge-MTs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/merge-spliceAI https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/mergeTDT https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/mergeVCFs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/prioritize-csq https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/prioritize-csq-ht https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/reblockGVCFs_updated https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/reheader-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-hail-cohort-set https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-hail-subset-samples https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-peddy https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-plink-vcftools https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-plink-vcftools-cohort-set https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-somalier https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-somalier-cohort-set https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-somalier-hg19 https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/relatedness-somalier-subset-samples https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/remove-regions-tsv https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/removeDuplicatesVCF2 https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/removeDuplicatesVCF_split https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/renameVCFSamples https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/runDeNovoSVs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/runIgvPlots https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/runPangolin https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/runSpliceAI https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/save-QC-TSVs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/scatter-chromosomes https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/scatter-hail-MTs https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/scatter-vcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/shardVcf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/somalier-find-sites https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vep-annotate-hail https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vep-annotate-hail-cluster https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vep-annotate-hail-extra https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vep-annotate-hail-ht https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vep-annotate-hail-mt https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/vepAnnotateHailNIFS https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/visualizePlots https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/visualizeSingleton https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/visualizeTrio https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/visualizeTrioOriginal https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-calculate-call-rate https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-check-known https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-full-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-reannotate-mpc-alpha-missense-loeuf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-step-01-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-step-02-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-step-03-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-step-04-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-denovo-step-05-remote-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-get-denovo-vep https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-get-denovo-vep-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-infer-platform https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wes-prioritize-csq https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-by-GT https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-by-GT-rates https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-full-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-reannotate-mpc-alpha-missense-loeuf https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-relatedness https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-01-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-02-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-03-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-04-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-05-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-06-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-07-pu-only https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-denovo-step-07-sharded https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/wgs-flag-outlier-samples https://dockstore.org/workflows/github.com/talkowski-lab/variant-interpretation/write-vcf-to-ht https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Call-single-sample-GVCF-GATK https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Collect-1000G-participants https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Generate-synthetic-reads https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Joint-call-and-hard-filter-GATK4 https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Mutate-reads-with-BAMSurgeon https://dockstore.org/workflows/github.com/terra-workflows/tetralogy-of-fallot/Predict-variant-effects-GEMINI https://dockstore.org/workflows/github.com/tewhey-lab/MPRAcount_terra/MPRAcount https://dockstore.org/workflows/github.com/tewhey-lab/MPRAmatch_terra/MPRAmatch https://dockstore.org/workflows/github.com/tewhey-lab/MPRAmodel_terra/MPRAmodel https://dockstore.org/workflows/github.com/tf2/CNest/cnest https://dockstore.org/workflows/github.com/tf2/CNest/cnest_part0 https://dockstore.org/workflows/github.com/tf2/CNest/cnest_part1 https://dockstore.org/workflows/github.com/tf2/CNest/cnest_part2 https://dockstore.org/workflows/github.com/tf2/CNest/cnest_part3 https://dockstore.org/workflows/github.com/tf2/CNest/cnest_part4 https://dockstore.org/workflows/github.com/theiagen/AlleleCalling-wdl/AlleleCalling-wdl https://dockstore.org/workflows/github.com/theiagen/HMAS-wdl/HMAS-Mixed-Sites https://dockstore.org/workflows/github.com/theiagen/HMAS-wdl/HMAS-QC-Pipeline2 https://dockstore.org/workflows/github.com/theiagen/OHDL-AR-wdl/ODHL-AR-Pipeline https://dockstore.org/workflows/github.com/theiagen/RefNAAP-wdl/RefNAAP-wdl https://dockstore.org/workflows/github.com/theiagen/bacterial-characterization/compile_ecoli https://dockstore.org/workflows/github.com/theiagen/bacterial-characterization/ecoli_char https://dockstore.org/workflows/github.com/theiagen/mycosnp-wdl/MycoSNP_Tree https://dockstore.org/workflows/github.com/theiagen/mycosnp-wdl/MycoSNP_Variants https://dockstore.org/workflows/github.com/theiagen/pb-hifi-viral/pb-hifi-viral-sarscov2 https://dockstore.org/workflows/github.com/theiagen/phvg-nf https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Apollo_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Core_Gene_SNP https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Gambit_Query https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Kleborate https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Kraken2_PE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/Kraken2_SE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/MashTree_FASTA https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/MycoSNP_Consensus_Assembly https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/MycoSNP_Tree https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/NCBI-AMRFinderPlus https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/RASUSA https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/SerotypeFinder https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/TBProfiler_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/TBProfiler_ONT https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/TheiaProk_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/TheiaProk_Illumina_SE https://dockstore.org/workflows/github.com/theiagen/public_health_bacterial_genomics/kSNP3 https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/AMR_Search_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Assembly_Fetch_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Augur_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Augur_Prep_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/BaseSpace_Fetch_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/CZGenEpi_Prep_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Cauris_CladeTyper_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Concatenate_Column_Content_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Concatenate_Illumina_Lanes_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Core_Gene_SNP_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Create_Terra_Table_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Dorado_Basecalling_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Fetch_SRR_Accession_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Find_Shared_Variants_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Freyja_Dashboard_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Freyja_FASTQ_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Freyja_Plot_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Freyja_Update_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Gambit_Core_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Gambit_Query_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Kraken2_ONT_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Kraken2_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Kraken2_SE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Lyve_SET_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/MashTree_FASTA_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Mercury_Prep_N_Batch_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/NCBI-AMRFinderPlus_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/NCBI_Scrub_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/NCBI_Scrub_SE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Nullarbor https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Nullarbor_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Pangolin_Update_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/RASUSA_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Reference_Genome_Consensus_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Rename_FASTQ_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/SRA_Fetch_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Samples_to_Ref_Tree_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Streamline_FASTA_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Streamline_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Tree https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Tree_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Variants https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Snippy_Variants_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TBProfiler_tNGS_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Terra_2_BQ_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Terra_2_GISAID_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Terra_2_NCBI_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_ClearLabs_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_FASTA_Batch_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_FASTA_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_Illumina_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_Illumina_SE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaCoV_ONT_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaEuk_Illumina_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaEuk_PE https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaMeta_Illumina_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaMeta_Panel_Illumina_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaProk_FASTA_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaProk_Illumina_PE_MMPDS_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaProk_Illumina_PE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaProk_Illumina_SE_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaProk_ONT_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/TheiaValidate_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Transfer_Column_Content_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Usher_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/VADR_Update_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/Zip_Column_Content_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_bioinformatics/kSNP3_PHB https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Freyja_Dashboard https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Freyja_FASTQ https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Freyja_Plot https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Freyja_Update https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/HIV_GC_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/HIV_GC_ONT https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Mercury_Batch https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Mercury_PE_Prep https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Mercury_Prep_N_Batch https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Mercury_SE_Prep https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/NCBI_Scrub_PE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/NCBI_Scrub_SE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Pangolin_Update https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/SC2_nextstrain https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Augur_DistanceTree https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Augur_Prep https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Augur_Run https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_ClearLabs https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_FASTA https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Illumina_SE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_ONT https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_Validate https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/TheiaCoV_WWVC https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_Augur_Prep https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_Augur_Run https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_ClearLabs https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_FASTA https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_Illumina_PE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_Illumina_SE https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_ONT https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/Titan_WWVC https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/VADR_Update https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/clearlabs_viral_refbased_assembly https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/genomic_cluster_analysis https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/sc2_batch_submission https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/sc2_pubRepo_prep_pe https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/sc2_pubRepo_prep_se https://dockstore.org/workflows/github.com/theiagen/public_health_viral_genomics/viral_refbased_assembly https://dockstore.org/workflows/github.com/theiagen/stylo-wdl/stylo-wdl https://dockstore.org/workflows/github.com/theiagen/terra_utilities/BAM_to_FASTQ_PE https://dockstore.org/workflows/github.com/theiagen/terra_utilities/BAM_to_FASTQ_SE https://dockstore.org/workflows/github.com/theiagen/terra_utilities/BaseSpace_Fetch https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Concatenate_Column_Content https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Concatenate_multilane_Illumina_FASTQs https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Import_PE_reads https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Import_SE_reads https://dockstore.org/workflows/github.com/theiagen/terra_utilities/SRA_Fetch https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Terra_2_BQ https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Terra_2_NCBI https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Transfer_Assembly_Files https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Transfer_Column_Content https://dockstore.org/workflows/github.com/theiagen/terra_utilities/Zip_Column_Content https://dockstore.org/workflows/github.com/theiagen/wm_training/Scan-N-Trim https://dockstore.org/workflows/github.com/theisaacwong/tester https://dockstore.org/workflows/github.com/thouis/gatk4-rnaseq-germline-snps-indels/gatk4-rnaseq-germline-snps-indels https://dockstore.org/workflows/github.com/tmooney/sequence-object-consolidator https://dockstore.org/workflows/github.com/tpesout/megalodon_wdl/DiploidMegalodon https://dockstore.org/workflows/github.com/tpesout/megalodon_wdl/Megalodon https://dockstore.org/workflows/github.com/tpesout/vgp-assembly/HelloWorldFileLocalization https://dockstore.org/workflows/github.com/tpesout/vgp-assembly/MarginPolishAssembly https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/AnnotSV https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/CNV_germline_case https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/CNVkit https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/ClinicalReport https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/ClinicalReportSNVOnly https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/FastQC https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/FuncotateSegments https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/GATKSelectVariants https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/GRIDSS https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/Manta https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/MultiSNVCaller https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/Oncokb https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/QCCheck https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/RSeQC https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/SNVGermline https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/SNVJudgementFilter https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/STARFusion https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/SamtoolsCoverageMapping https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/Strelka2 https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/Svaba https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/VEP104 https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/WGSAlignment https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/WGSVariantPipeline https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/WGS_Germline_pipeline https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/abra2Realigner https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/bcftoolsFilter https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/downsample https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/jointGenotyping https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/kallisto https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/pisces https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/star https://dockstore.org/workflows/github.com/trinhan/WDLPipelines/wgsMetrics https://dockstore.org/workflows/github.com/umccr/cwl-ica/bclconvert-interop-qc_1_3_1-1_21 https://dockstore.org/workflows/github.com/umccr/cwl-ica/dragen-somatic-with-germline-pipeline_4_2_4 https://dockstore.org/workflows/github.com/umccr/cwl-ica/dragen-transcriptome-pipeline_4_2_4 https://dockstore.org/workflows/github.com/umccr/cwl-ica/rnasum-pipeline_1_0_0 https://dockstore.org/workflows/github.com/umccr/cwl-ica/umccrise-pipeline_2_3_1-1 https://dockstore.org/workflows/github.com/vdauwera/GATK-for-Microbes https://dockstore.org/workflows/github.com/vdauwera/ashg20 https://dockstore.org/workflows/github.com/vdauwera/genomics-book https://dockstore.org/workflows/github.com/vedomics/VK_test_gemstone_workflows/bakta https://dockstore.org/workflows/github.com/vedomics/VK_test_gemstone_workflows/ska_compare https://dockstore.org/workflows/github.com/vedomics/VK_test_gemstone_workflows/ska_fasta https://dockstore.org/workflows/github.com/vedomics/VK_test_gemstone_workflows/strain_to_skf https://dockstore.org/workflows/github.com/vgteam/vg_wdl/Giraffe https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepTrio https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepVariant https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepVariantFromCRAM https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepVariantFromGAF https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepVariantFromGAM https://dockstore.org/workflows/github.com/vgteam/vg_wdl/GiraffeDeepVariantLite https://dockstore.org/workflows/github.com/vgteam/vg_wdl/HappyEvaluation https://dockstore.org/workflows/github.com/vgteam/vg_wdl/giraffe_and_deeptrio https://dockstore.org/workflows/github.com/vgteam/vg_wdl/sortGraphAlignedReads https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg-pedigree-giraffe-deeptrio https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg-pipeline-workingexample https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg_map_call_sv https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg_map_call_sv_cram https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg_map_call_sv_wdl_checker https://dockstore.org/workflows/github.com/vgteam/vg_wdl/vg_mapgaffe_call_sv_cram https://dockstore.org/workflows/github.com/violethaze74/generic-variant-calling-wgs-pe/main https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/au_metrics https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/calculate_mean_shap https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/create_peak_wise_splits https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/fastpredict_dev https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/gc_matched_negatives_dev https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/importance_hdf5_to_bigwig https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/model_stats https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/modisco https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/motif_hit_calling https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/outlier_detection https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/predict_on_bed_file https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/run_basic_stats https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/run_modeling_dev https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/run_performance_reports https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/run_preprocess https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/shap https://dockstore.org/workflows/github.com/viramalingam/tf-atlas-pipeline/test_motifs https://dockstore.org/workflows/github.com/viramalingam/tf_atlas_analysis/hyperparameter_tuning https://dockstore.org/workflows/github.com/viramalingam/tf_atlas_analysis/outlier_detection https://dockstore.org/workflows/github.com/viramalingam/tf_atlas_analysis/preprocess https://dockstore.org/workflows/github.com/vjcitn/BiocOncoTK/msireg1 https://dockstore.org/workflows/github.com/vjcitn/bioc_dockstore_loverna https://dockstore.org/workflows/github.com/vjcitn/bioc_dockstore_loverna/bioc_dockstore_loverna_bioc3_8 https://dockstore.org/workflows/github.com/vjcitn/dsdemo https://dockstore.org/workflows/github.com/vjcitn/favdemo https://dockstore.org/workflows/github.com/vjcitn/mmSCQC/fromAaronLunSimpleSingleCell https://dockstore.org/workflows/github.com/vjcitn/msiboxes/csvgen https://dockstore.org/workflows/github.com/vjcitn/vardemo/AnnotatingWGSVariantsWithBioc https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorOneVmWorkflowOnSB-CGC-Test https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorOneVmWorkflowOnSB-CGC-Test3 https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorOneVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorthreeVmWorkflowOnSB-CGC https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatorthreeVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatortwoVmWorkflowOnSB-CGC https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/TotalSegmentatortwoVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/Cloud-Resources-Workflows/perFrameFunctionalGroupSequenceExtractionOnTerra https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/TotalSegmentatorOneVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/TotalSegmentatorthreeVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/TotalSegmentatortwoVmWorkflowOnSB-CGC https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/TotalSegmentatortwoVmWorkflowOnTerra https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/convertRadiomicsJsonToDataframeOnTerra https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/perFrameFunctionalGroupSequenceExtractionOnTerra https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed/mhubaiDockerfileWorkflow https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed/mhubai_totalseg https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed2/mhubaiDockerfileWorkflow https://dockstore.org/workflows/github.com/vrockai/dockstore-whalesay https://dockstore.org/workflows/github.com/vruano/warp/WholeGenomeGermlineSingleSample https://dockstore.org/workflows/github.com/waldronlab/TCGA-workflows https://dockstore.org/workflows/github.com/welch-lab/steamer https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-ATACseq https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-RNAseq https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-mCseq https://dockstore.org/workflows/github.com/williamrowell/wdl-mock-workflow https://dockstore.org/workflows/github.com/wnojopra/gatk/GvsJointVariantCalling https://dockstore.org/workflows/github.com/workflow-development-interest-group/bio-cwl-tools/prefetch_fastq https://dockstore.org/workflows/github.com/wshands/hmmer-docker https://dockstore.org/workflows/github.com/wshands/simple_cwl_workflow https://dockstore.org/workflows/github.com/wshands/test-workflows-and-tools https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/detect_variants_wgs https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/immuno https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/somatic_wgs https://dockstore.org/workflows/github.com/xbrianh/xscanpy/cbScanpyHCA https://dockstore.org/workflows/github.com/xingjiepan/feb_9_practice/WDL-101-BAM https://dockstore.org/workflows/github.com/xzhuo/methylation/remora https://dockstore.org/workflows/github.com/yfarjoun/warp/JointGenotyping https://dockstore.org/workflows/github.com/yfarjoun/warp/UltimaGenomicsWholeGenomeGermline https://dockstore.org/workflows/github.com/yubocheng/Rcollectlworkflowh5ad https://dockstore.org/workflows/github.com/yubocheng/Rcollectlworkflowh5ad/workflow_h5ad_DelayedArray_parameters https://dockstore.org/workflows/github.com/yubocheng/performancesummary https://dockstore.org/workflows/github.com/yuliamostovoy/card_workflows/evaluateSVsWithTTMars https://dockstore.org/workflows/github.com/zhengxinchang/terra-kanpig/kanpig-terra https://dockstore.org/workflows/github.com/zhengxinchang/terra_pgrtk_wdl/PGRTK-cloud https://dockstore.org/workflows/github.com/zweber-compbio/Mutect2_Workflows https://dockstore.org/workflows/gitlab.com/wangbin2/gatk/cnv_somatic_pair_workflow_copy