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https://dockstore.org/containers/quay.io/arhodes_cgrb_osu/dockstore-training-fastqc-ar
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https://dockstore.org/containers/quay.io/briandoconnor/dockstore-tool-bamstats-class
https://dockstore.org/containers/quay.io/briandoconnor/dockstore-tool-md5sum
https://dockstore.org/containers/quay.io/briandoconnor/dockstore-workflow-md5sum-tester
https://dockstore.org/containers/quay.io/briandoconnor/fastqc
https://dockstore.org/containers/quay.io/brunograndephd/dockstore-intro
https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-liftover
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https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-snpeff
https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-ubu-sam-diff
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https://dockstore.org/containers/quay.io/cancercollaboratory/dockstore-tool-ubu-sam-summary
https://dockstore.org/containers/quay.io/cblatti3/kn_fetcher
https://dockstore.org/containers/quay.io/cblatti3/kn_mapper
https://dockstore.org/containers/quay.io/chienchi/dockstore-edge-covid19
https://dockstore.org/containers/quay.io/chienchi/dockstore-edge-covid19/edge-covid19-sra
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bamstats/bam-stats
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bedtools-genomecov
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-aln
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-mem
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-bwa-samse
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-kallisto
https://dockstore.org/containers/quay.io/collaboratory/dockstore-tool-linux-sort
https://dockstore.org/containers/quay.io/ctb/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/denis_yuen/dockstore-test3
https://dockstore.org/containers/quay.io/dockstore-testing/test_repo
https://dockstore.org/containers/quay.io/dockstore/phylowgs
https://dockstore.org/containers/quay.io/dvoet/dockerstor_tutorial
https://dockstore.org/containers/quay.io/eiffl/txpipe/TXDiagnosticMaps
https://dockstore.org/containers/quay.io/eiffl/txpipe/TXRandomPhotozPDF
https://dockstore.org/containers/quay.io/encode-dcc/filter
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https://dockstore.org/containers/quay.io/encode-dcc/post_mapping
https://dockstore.org/containers/quay.io/encode-dcc/validator
https://dockstore.org/containers/quay.io/encode-dcc/xcor
https://dockstore.org/containers/quay.io/eugenradu/testing
https://dockstore.org/containers/quay.io/f73chen/dockstore-test3
https://dockstore.org/containers/quay.io/f73chen/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/f73chen/new_account_bamstats/quay_new_account_bamstats
https://dockstore.org/containers/quay.io/florentiner/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/florentiner/dockstore-tool-bamstats_2
https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-helloworld
https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-helloworld-checker
https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-synapse-get
https://dockstore.org/containers/quay.io/ga4gh-dream/dockstore-tool-synapse-submit
https://dockstore.org/containers/quay.io/gabdank/post_mapping
https://dockstore.org/containers/quay.io/ibrahimjabarkhel/toolkit-for-generating-test-data/Generating-Test-Data
https://dockstore.org/containers/quay.io/icgc-argo/bwa-mem-aligner
https://dockstore.org/containers/quay.io/ilya_broad/docker-tool-cosi2
https://dockstore.org/containers/quay.io/ivazquez/clonehd-pcawg
https://dockstore.org/containers/quay.io/jeremiahsavage/awscli
https://dockstore.org/containers/quay.io/jhrf/telomerecat
https://dockstore.org/containers/quay.io/jlanej/mosdepth-docker
https://dockstore.org/containers/quay.io/jmonlong/dockstore-ktag
https://dockstore.org/containers/quay.io/jwerner_dkfz/DKFZBiasFilter
https://dockstore.org/containers/quay.io/jwerner_dkfz/pancanqc
https://dockstore.org/containers/quay.io/k-cao/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/keiranmraine/dockstore-dd
https://dockstore.org/containers/quay.io/ljdursi/pcawg-merge-annotate
https://dockstore.org/containers/quay.io/luizirber/sourmash-cwl
https://dockstore.org/containers/quay.io/mdaya/filter_rsq/filterrsq
https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/create_mr_mega_input
https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/run_metal
https://dockstore.org/containers/quay.io/mdaya/mr_mega_qt/run_mr_mega
https://dockstore.org/containers/quay.io/mdaya/topmed_imputation
https://dockstore.org/containers/quay.io/mduran/generate-igv-session_2/GenerateIGVSession
https://dockstore.org/containers/quay.io/mr_c/khmer
https://dockstore.org/containers/quay.io/nceglia/cellassign-tool
https://dockstore.org/containers/quay.io/nceglia/clonealign-tool
https://dockstore.org/containers/quay.io/nceglia/scvis-tool
https://dockstore.org/containers/quay.io/pancancer/pcawg-bwa-mem-workflow
https://dockstore.org/containers/quay.io/pancancer/pcawg-consensus-caller
https://dockstore.org/containers/quay.io/pancancer/pcawg-dkfz-workflow
https://dockstore.org/containers/quay.io/pancancer/pcawg-muse
https://dockstore.org/containers/quay.io/pancancer/pcawg-oxog-filter
https://dockstore.org/containers/quay.io/pancancer/pcawg-sanger-cgp-workflow
https://dockstore.org/containers/quay.io/pancancer/pcawg_delly_workflow
https://dockstore.org/containers/quay.io/pancancer/variantbam
https://dockstore.org/containers/quay.io/pooja043/genomics_docker/BWA_MEM
https://dockstore.org/containers/quay.io/pvanheus/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/pvanheus/repeatmasker
https://dockstore.org/containers/quay.io/ratschlab/workflow-experiment
https://dockstore.org/containers/quay.io/redaq/bcf-convert-vcf
https://dockstore.org/containers/quay.io/richardhansen/hello_world_testing
https://dockstore.org/containers/quay.io/sagebionetworks/dockstore-tool-mageck
https://dockstore.org/containers/quay.io/shanrongzhao/bamstats
https://dockstore.org/containers/quay.io/standage/megahit-dockstore
https://dockstore.org/containers/quay.io/standage/tag-dockstore-test
https://dockstore.org/containers/quay.io/superjw/dockstore-tool-bamstats
https://dockstore.org/containers/quay.io/testaccountq/test6
https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore-tool-gene-by-cell-creator
https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore-tool-runner
https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_adtex
https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_arriba
https://dockstore.org/containers/quay.io/ucsc_cgl/dockstore_tool_varscan_cnv
https://dockstore.org/containers/quay.io/ucsc_cgl/protect
https://dockstore.org/containers/quay.io/ucsc_cgl/rnaseq-cgl-pipeline
https://dockstore.org/containers/quay.io/ucsc_cgl/simple_python
https://dockstore.org/containers/quay.io/wshands/bare_bcbio/bare_bcbio_germline_variant_calling
https://dockstore.org/containers/quay.io/wshands/bare_bcbio/bare_bcbio_somatic_variant_calling
https://dockstore.org/containers/quay.io/wshands/fastqc
https://dockstore.org/containers/quay.io/wshands/walts_python
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https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bg2bw
https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bwcat
https://dockstore.org/containers/quay.io/wtsicgp/cgpbigwig/bwjoin
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-biobambam2/bamtofastq
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-chksum
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-irap
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-irap/cgp_irap
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgp-seqval
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bedgraph
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bw
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bam2bwbases
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bg2bw
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bwcat
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpbigwig/bwjoin
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-bamCsiOut
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-bamOut
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpmap/cgpmap-cramOut
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpwgs
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-cgpwxs
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-ppcg-gridss/GRIDSS-ppcg-wrapper
https://dockstore.org/containers/quay.io/wtsicgp/dockstore-pycrisprcleanr
https://dockstore.org/containers/quay.io/wtsicgp/gatk_eze/bam_to_gvcf_haplotypcaller
https://dockstore.org/containers/quay.io/wtsicgp/ppcg-qc-from-sanger
https://dockstore.org/containers/quay.io/zek12/dockerized_gatk_pipeline
https://dockstore.org/containers/quay.io/zek12/dockstore-tool-bamstats
https://dockstore.org/containers/registry.hub.docker.com/ajsenf/orgaquant
https://dockstore.org/containers/registry.hub.docker.com/broadinstitute/pcawg_broad_wgs_variant_callers/pcawg-broad-wgs-variant-caller
https://dockstore.org/containers/registry.hub.docker.com/cancercollaboratory/dockstore-tool-bamstats
https://dockstore.org/containers/registry.hub.docker.com/dailyk/dockstore-tool-bwa-mem/bwa-mem
https://dockstore.org/containers/registry.hub.docker.com/dailyk/ghtf-r35-jpy-singlecell
https://dockstore.org/containers/registry.hub.docker.com/g3chen/new_account_bamstats
https://dockstore.org/containers/registry.hub.docker.com/g3chen/output-test
https://dockstore.org/containers/registry.hub.docker.com/ga4gh/refget-compliance-suite
https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/bundle
https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/bundle_min
https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/find
https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/preprocessing
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https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/ref_min
https://dockstore.org/containers/registry.hub.docker.com/genxnetwork/grape/simulate
https://dockstore.org/containers/registry.hub.docker.com/jamesrcounts/variantspark/variant-spark
https://dockstore.org/containers/registry.hub.docker.com/karchinlab/opencravat
https://dockstore.org/containers/registry.hub.docker.com/karchinlab/opencravat-cwl-install/opencravat-install
https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn-jupyter-docker
https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn/blastn
https://dockstore.org/containers/registry.hub.docker.com/lynnlangit/blastn/blastn-test
https://dockstore.org/containers/registry.hub.docker.com/manninglab/singlevariantassociation/summaryCSV
https://dockstore.org/containers/registry.hub.docker.com/mazumderlab/biomuta_docker_image/biomuta
https://dockstore.org/containers/registry.hub.docker.com/mruffalo/star-grch38/star-2_6_1e
https://dockstore.org/containers/registry.hub.docker.com/nathankw/dockstore-tool-bamstats
https://dockstore.org/containers/registry.hub.docker.com/nlppln/nlppln-align
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/fpfilter
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/muse
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/mutect
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/pindel
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/radia
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/radia/radia_filter
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/samtools-pileup
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/somatic-sniper/somaticsniper
https://dockstore.org/containers/registry.hub.docker.com/opengenomics/varscan/varscan_somatic
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bai/bai
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bamsubsample/bamsubsample
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bcftovcf/bcftovcf
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/bwa_mem_bamsormadup/bwa_mem_bamsormadup
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_call_cnvs/clamms_call_cnvs
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_compute_windows/clamms_compute_windows
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_fit_models/clamms_fit_models
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clamms_normalize_coverage/clamms_normalize_coverage
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/clinvar_parser/clinvar_parser
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/codondex-iscore/codondex-iscore
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/cutadapt/cutadapt
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/dbnsfp_parser/dbnsfp_parser
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demobharris/demobharris
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demodfraser/demodfraser
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demokking/demokking
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demopstjean/demopstjean
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/demosj/demosj
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/elprep/elprep
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/exac_parser-openbiosd/exac_parser-openbiosd
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/exac_parser/exac_parser
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fastqc_demo/fastqc_demo
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/faststructure/faststructure
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fermikit/fermikit
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/fermikit_nctr/fermikit_nctr
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/freebayes/freebayes
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/ga4gh-report-comparison/ga4gh-report-comparison
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/ga4gh-streaming-freebayes/ga4gh-streaming-freebayes
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5/gatk-haplotypecaller-hs37d5
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller-hs37d5decoy/gatk-haplotypecaller-hs37d5decoy
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-haplotypecaller/gatk-haplotypecaller
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-hs37d5decoy-hardfilter/gatk-hs37d5decoy-hardfilter
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk-validatevariants/gatk-validatevariants
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/gatk4-haplotypecallerspark-hs37d5/gatk4-haplotypecallerspark-hs37d5
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/goi-diversity/goi-diversity
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/hive-insilico/hive-insilico
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/illumina-happy-comparison-customstratify/illumina-happy-comparison-customstratify
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/illumina-happy-comparison/illumina-happy-comparison
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/key_gene_coverage/key_gene_coverage
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/methylextract/methylextract
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/picard-markduplicates/picard-markduplicates
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/picard-meanqualitybycycle/picard-meanqualitybycycle
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/platypus-2/platypus-2
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/platypus/platypus
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/primus/primus
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/protein_pattern_hash/protein_pattern_hash
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/rna2dnalign/rna2dnalign
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/rtg-core-variant-caller/rtg-core-variant-caller
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/scalpel-discovery-single/scalpel-discovery-single
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/snpeff/snpeff
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/snpsift-filter/snpsift-filter
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/soapdenovo-demo/soapdenovo-demo
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/testapp/testapp
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/url-fetcher/url-fetcher
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varscan/varscan
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-art-clinvar-simulation/varsim-art-clinvar-simulation
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-art-simulation/varsim-art-simulation
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/varsim-vcfcompare/varsim-vcfcompare
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcf-comparison/vcf-comparison
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcfeval-happy-comparison-vcfcheck/vcfeval-happy-comparison-vcfcheck
https://dockstore.org/containers/registry.hub.docker.com/pfda2dockstore/vcfeval-happy-comparison/vcfeval-happy-comparison
https://dockstore.org/containers/registry.hub.docker.com/postgres/postgres/private_demo
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-create
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get-annotations
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-get-sts
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-query
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-set-annotations
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-store
https://dockstore.org/containers/registry.hub.docker.com/sagebionetworks/synapsepythonclient/synapse-sync-to-synapse
https://dockstore.org/containers/registry.hub.docker.com/sequenza/sequenza
https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_bwa_sbg_modified
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https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07a-FilterBatchSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07b-PlotSVCountsPerSample
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/07c-FilterBatchSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/08-MergeBatchSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/08-PlotSVCountsPerSample
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09-FilterBatchSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09-GenotypeBatch
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09c_ManualReviewAndNCRPatch_ManualReview
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/09c_ReviseVcfWithCpxManualResultsOnly
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/10-MergeBatchSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/10-RegenotypeCNVs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/11-GenotypeBatch
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/11-MakeCohortVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/12-AnnotateVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/12-RegenotypeCNVs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/13-CombineBatches
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/14-ResolveComplexVariants
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/15-GenotypeComplexVariants
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/16-CleanVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/17-MainVcfQc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/17-MasterVcfQc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/18-AnnotateVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContext
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContextSharded
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicContext_xz_fixes_4
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateGenomicDisorderRegions
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/AnnotateVcfAF
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyManualVariantFilter
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyManualVariantFilterPerContig
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplyNCRAndRefArtifactFilters
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ApplySRFlagsHotfix
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BAFFromShardedVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BatchEffectAcrossContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BenchmarkGqFilter
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/BoostModel
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalcuFstPopFromSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalcuNcasStat
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFst
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstLargeVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstLargeVcfWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateFstWholeGenomeAou
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateGeneInterruptionPerGenome
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CalculateSaturationStat
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CleanVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CleanVcfChromosome
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ClusterBatch
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ClusterTloc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CollectSampleQcMetrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CombineBatches
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CombineVcfsForMakeGq
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CompareSVCallsets
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatTextFiles
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatVcfContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ConcatVcfs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/CrossValidateGqRecalibrator
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/DetectBatchEffectsStep1
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/DetectBatchEffectsStep2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/EnforceMinNoCallRate
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/EvidenceQC
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExaminePEMetricsForCPX_xz
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractFiltersFromVcfs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractQualFromVcfs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractVariantsInGeneList
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ExtractVcfSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchQc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterBatchSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterComplexAcrossContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterGenotypes
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterGenotypesSharded
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamplesFinal
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterOutlierSamplesWithPreprocessing
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterRecalibratedVcf
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FilterUnassignedSexGenotypes
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FormatVcfForGatk
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/FormatVcfForGatkScattered
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part1-CollectData
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part2-TrainModel
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GATKSV-FilterGTs-Part3-ApplyModel
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GatherBatchEvidence
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GatherSampleEvidence
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenerateBatchMetrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeBatch
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeComplexVariants
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GenotypeGenomicDisorderRegions
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GetVariantListsFromVaporAndIRSReports
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/GetVcfStats
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/IGVSingleGenomeScatter
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/JoinRawCalls
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/LongReadVsShortRead
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MELT
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MW_BatchEvidenceMerging
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MainVcfQc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeBincovMatrix
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeGqRecalibratorTrainingSetFromPacBio
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MakeTarVall
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualCnvRevision
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualCnvRevisionAcrossContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManualReview
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Manual_Review
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ManuallyReviewBalancedSVs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MergeBatchSites
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/MergeMEIAlts
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Minimap
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module03Qc
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07FilterCleanupQualRecalibration
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07MinGQ
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07XfBatchEffect
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Module07XfBatchEffect_no_pairwise
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Mosaic
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Mosaic_SV_discovery
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/NCAS
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRClustering
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRClustering_OldVersion
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PESRPreprocessing
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PlotSVCountsPerSample
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PreprocessVcfForMakeGq
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/PreprocessVcfForVapor
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RdTestMultiBatches
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RdTestMultiBatchesWrapper
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReAnnotateVcfForRelease4_1
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfAcrossGenomicContext_xz_fixes_4
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfAcrossSVTYPE_xz_fixes_4
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfSVsUnit
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReClusterCleanVcfWholeGenome_xz_fixe_4
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RecalibrateGq
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RefineComplexVariants
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RefinePacbioTruthset
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RegenotypeCNVs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RemoveAnnotationsAcrossContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RemoveExcludedRegions
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RemoveINSChr2End2Fields_pre_reclustering
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RenameVcfSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ReshardVcf_test_sz
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ResolveComplexVariants
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/RevertLargeMEDeletions
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVCallsetComparisonbyContig
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordance
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordancePacBio
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordanceScattered
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordanceSimple
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConcordance_mw_sv_concordance_opt_updated_2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SVConstraint
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SanitizeHeader
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/ShardedCluster_xz_fixes_4
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SingleSamplePipelinePart2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesList
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesScattered
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/SubsetVcfBySamplesWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TabixRdMetrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TinyResolve
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/TrainGCNV
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VaPoR
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/Vapor
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VaporAndIRSSupportReport
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VcfToBedAcrossContigs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/VisualizeCnvs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/expansionhunter_v5_128gb
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/expansionhunter_v5_64gb
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/gatk-sv-single-sample
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/gatk-sv-str
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/igv-trio-plots-all-samples
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/merge-cohort-vcfs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00a
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00a-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00b
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00c
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module00c-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module01
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module01-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module02
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module02-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module03
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module03-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module04b
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module0506
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module0506-metrics
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/module08-annotation
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_128g_v1_2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_64gb_v2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer_v2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_temp_reviewer_v3
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/str_v1_2
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/sz_test_genotype_batch
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/train-gCNV
https://dockstore.org/workflows/github.com/broadinstitute/gatk-sv/vcf2bed
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ApplyBQSR
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ApplyBQSRAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/BaseRecalibrator
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/BaseRecalibratorAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ClipReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ClipReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CollectReadCounts
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CollectReadCountsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CombineGVCFs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CombineGVCFsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountBases
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountBasesAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/CountReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FixMisencodedBaseQualityReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FixMisencodedBaseQualityReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FlagStat
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/FlagStatAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/GatherTranches
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/GatherTranchesAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/LeftAlignIndels
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/LeftAlignIndelsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/PrintReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/PrintReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ReadAnonymizer
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/ReadAnonymizerAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/RevertBaseQualityScores
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/RevertBaseQualityScoresAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitNCigarReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitNCigarReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitReads
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/SplitReadsAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/UnmarkDuplicates
https://dockstore.org/workflows/github.com/broadinstitute/gatk-tool-wdls/UnmarkDuplicatesAllArgs
https://dockstore.org/workflows/github.com/broadinstitute/gatk/ComparePgenAndVcfScatter
https://dockstore.org/workflows/github.com/broadinstitute/gatk/Funcotator
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsAssignIds
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBenchmarkExtractTask
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBeta
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsBulkIngestGenomes
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCalculatePrecisionAndSensitivity
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCallsetCost
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCallsetStatistics
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateFilterSet
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateTables
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVAT
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATAnnotations
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATFilesFromBigQuery
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVATfromVDS
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsCreateVDS
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractAvroFilesForHail
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallset
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgen
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgenMerged
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallsetPgenMerged_ACAF
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCallset_ACAF
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsExtractCohortFromSampleNames
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsImportGenomes
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsIngestTieout
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsJointVariantCalling
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsJointVariantCallsetCost
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsParallelIntegrationTest
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPopulateAltAllele
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPrepareBulkImport
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsPrepareRangesCallset
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsQuickstartHailIntegration
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https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsQuickstartVcfIntegration
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsRescatterCallsetInterval
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsSnapshotRun
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsValidateVDS
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsValidateVat
https://dockstore.org/workflows/github.com/broadinstitute/gatk/GvsWithdrawSamples
https://dockstore.org/workflows/github.com/broadinstitute/gatk/MergePgen
https://dockstore.org/workflows/github.com/broadinstitute/gatk/MergePgenHierarchicalWdl
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https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_case_filter_workflow
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https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_case_workflow
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_cohort_workflow
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_germline_combined_exome_cohort_jointcall_workflow
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_joint_call_exomes
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_somatic_pair_workflow
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cnv_somatic_panel_workflow
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cram2filtered
https://dockstore.org/workflows/github.com/broadinstitute/gatk/cram2model
https://dockstore.org/workflows/github.com/broadinstitute/gatk/mutect2
https://dockstore.org/workflows/github.com/broadinstitute/gatk/mutect2_pon
https://dockstore.org/workflows/github.com/broadinstitute/gatk/pathseq_pipeline
https://dockstore.org/workflows/github.com/broadinstitute/gatk/run_happy
https://dockstore.org/workflows/github.com/broadinstitute/genomestrip-terra/gs_analyze_C4AB_batch
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https://dockstore.org/workflows/github.com/broadinstitute/hidive/HidiveCohort
https://dockstore.org/workflows/github.com/broadinstitute/hidive/HidiveSample
https://dockstore.org/workflows/github.com/broadinstitute/hidive/SubsetAndAlignBam
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https://dockstore.org/workflows/github.com/broadinstitute/horsefish/create_object_md5
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/deliver_prs_to_anvil
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/ingest_dragen_data_to_tdr
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/migrate_bucket_data_via_local
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/monitor_submission
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/parse_dragen_metrics
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/reheader_cram
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/run_shell_script
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/sam_demo
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/samtools_split
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/simulations_demo
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https://dockstore.org/workflows/github.com/broadinstitute/horsefish/validate_cram_file
https://dockstore.org/workflows/github.com/broadinstitute/horsefish/validate_sam_file
https://dockstore.org/workflows/github.com/broadinstitute/igvf-atomic-workflows/IGVF-single_cell_pipeline
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https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/masseq_main
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https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/pbskera_main
https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/sc_isoseq_groupdedup
https://dockstore.org/workflows/github.com/broadinstitute/kinnex-preliminary-processing/sc_kinnex_lima_plus_isoseq
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/00_BarcodeExtractor
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AlignAssemblies
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AlignedBamQCandMetrics
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https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AnnotateVCFInsRM
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AnnotateVariantContext
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/AsmEvaluationDipcall
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BackupWorkspace
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BandagePlotGraph
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BenchmarkVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BionanoAssemble
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BroadOnPremMalariaAlignmentAndVariantCalling
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BuildPGGBPangenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/BuildTempLocalFpStore
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallSniffles
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallStructuralVariantsFromLongreads
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallTranslocator
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CallVariantsReadBased
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CleanupIntermediate
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Clipper
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectBamFlagStats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageAtSampleLevel
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageOverBed
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectCoverageOverRegion
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CollectSingleSampleSVvcfMetrics
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CompareVcfBenchmarks
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CompressLongreadsBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ComputePerBaseDepth
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ComputeReadLengths
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToHailMT
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToHailMTT2T
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ConvertToZarrStore
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CountSingleSampleSVs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CountTheBeans
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBed
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsFlowcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsOneUnit
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverBedsPerBase
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageOverWGS
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/CoverageStats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeduplicateAndResetONTAlignedBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeduplicateONTBamAndPepperIt
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DeepSomatic
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromFTP
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromHudsonAlpha
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromSRA
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DownloadFromWeb
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Dummy
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DummyAlignmentFlagMetricsCollector
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/DystPeaker
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ECIdentity
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/EstimateLrSamplePloidy
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExpandedDrugResistanceMarkerAggregation
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExpandedDrugResistanceMarkerExtraction
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractAouData
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractCoverageStats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractReadsByName
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ExtractRegionsFromBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FASTQstats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FASTQstatsFromBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FemaleXYDV
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterAnnotateVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterBamByLength
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterChromosomalFeatures
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FilterVcfHybridPhasing
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/FindBamIdentity
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Flare
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/GenerateMalariaReport
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastQ
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastqSimple
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiBamToFastqSimpleImproved
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiCNV
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiFiTRGT
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiUstats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiUstatsDemuxed
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiasmFullLengthContig
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HifiasmOnDiploid
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiphaseJointCall
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HiphaseJointCallTRGT
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariantHyphase
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariantMargin
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseOneChrSmallVariants
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenomeHiphase
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HybridPhaseWholeGenomeMargin
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/HyphaseSingleSample
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_Screenshot
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_improved
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IGV_HaplotypeViz_more_inputs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumAssembleWithMcCortex
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumAssembleWithSPAdes
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumErrorCorrectBayesHammer
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumFastP
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumPlasmidSPAdes
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IllumTrimReads
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IndexAndFinalizeVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/IndexVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishKmerCounting
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishKmerCountingPerSample
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JellyfishMergingKmerCount
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointLocalAsmAnchorGraph
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointLocalAsmAnchorGraph1
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/JointVCFSmallVariantsBasicMetrics
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRCNVs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRConvertBCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRJointCallGVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRJointCallGVCFsWithGenomicsDB
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRMergeSVVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRProcessIntervalsForCnv
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRStatisticallyPhaseVariants
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LRVisualizeVariants
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyCanu
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyHifiasm
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalAssemblyHifiasmTrio
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalFast5Subset
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LocalJointAssembly
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LongReadsContaminationEstimation
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/LongphaseSingleSample
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MASisoseqSample
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MOBsuiteRecon
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MakeIGVScreenPNGs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MapAssemblyContigs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeFastqs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeHiFiFastQs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergePhasedVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergeSampleBamsAndCollectMetrics
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MergedAssemblyCanu
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Minimap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/MitoHifiLocalAssembly
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Modbam2bed
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/NormalizeVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONT10x
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTAssembleWithCanu
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTAssembleWithFlye
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTBamCheckBeforeIngestion
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTBasecall
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcellFromMultipleBasecalls
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTFlowcellWGSuBAM
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTMethylation
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTPfHrp2Hrp3Status
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTPfTypeDrugResistanceMarkers
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTProcessBasecall
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTQCReport
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTTelomereBasecaller
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ONTWholeGenomePlasmid
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PALMER
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqArraySingleFlowcellv5
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqCorrectUMIs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PB10xMasSeqSingleFlowcellv4
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBAssembleWithHifiasm
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCS
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCS10x
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDVOnInterval
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDemultiplex
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSDemultiplexWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSFlowcellFastqs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSIsoSeq
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSNoSharding
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCCSWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCLRDemultiplexWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBCLRWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFindAndSummarizeBAMs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFlowcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBFlowcellWinnowmap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBIndex
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBMASIsoSeqDemultiplex
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBMASIsoSeqQuantify
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBNonBarcodedWGSSMRTcellPostprocess
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBNonBarcodedWGSSMRTcellPreprocess
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBUnbarcodedSMRTcellAlign
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PBUnbarcodedSMRTcellPreprocess
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PaftoolAsmVariants
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PanelProcessMalariaBarcodesForRh
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Paraphase
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PbCpG
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumDrugResistanceSummary
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumHrp2Hrp3Status
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumPolygenomicityBarcodeEstimate
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PfalciparumTypeDrugResistanceMarkers
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhaseBams
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhaseMergedSNVVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PhasingStatistics
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PlotResource
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PostprocessCCSedDemultiplexedSMRTCell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreProcessRevioSMRTcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PrepareReferenceMap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreprocessBarcodedCCSedSMRTCell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/PreprocessDemultiplexedCCSedSMRTCell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessMalariaBarcodesDemo
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessOnInstrumentDemuxedChunk
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessOnInstrumentDemuxedChunkRefFree
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ProcessRevioSMRTcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/QuastEval
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ReadManifestTableHiphase
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ReadManifestTableStatistical
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RemoveDuplicateFromMergedONTBamAndSplitByReadgroup
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RemoveRedundantReblocksInGVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RepairBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ResetSampleNameInBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/ResetSampleNameInSingleSampleVcf
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/RunPanaroo
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRBamToFq
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRDownsampleBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRFlowcell
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRFlowcellDecontaminate
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRIndexBam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDBBootstrap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VETS
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRJointCallGVCFsWithGenomicsDB_Pf_Niare_VQSR
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRReblockGVCFs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenomeBootstrap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome_Pf_Niare_VETS
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SRWholeGenome_Pf_Niare_VQSR
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SVAnnotate
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SexCheckNaive
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit4PhaseWholeGenome
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit5
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Shapeit5Switch
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SingleSampleStats
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SmallVariantsBasicMetrics
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SmallVariantsSmellTest
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Sniffles2JointCallSV
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SortHugegVCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Spade_assembly
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitCohortBAMsAndVCFsForPhasing
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitMergedBamByReadGroup
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SplitMergedPacBioBamByReadgroup
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeGCNV
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeHiFiCNV
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SummarizeSmallVariants
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SupplementMOBsuiteDB
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/SvQCPlots
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/TTMarsEvaluateSVs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_DVP_phasing
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_Index_RAW_CCS_BAMs
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_Phase_CCS_DVP_VCF
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Temp_haplotag_ccs_bam
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/TestNewPBAlign
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/UpdatePlasmidDB
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VariantStatsOverRegion
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyBamFingerprint
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyFingerprint
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/VerifyFingerprintCCSSample
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/WhatshapPhasing
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/WinMap2
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/Winnowmap
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/count_records
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/sz_test_RemoveSingleOrganismContamination
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/test_ShortReadsContaminationEstimation
https://dockstore.org/workflows/github.com/broadinstitute/long-read-pipelines/xTea
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/BatchSplitCohortVcf
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/ChromosomePhasedPanelCreationFromHiPhase
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/ConcatAndEvaluate
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/FixVariantCollisions
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/GLIMPSEBatchedCasePerChromosome
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/HierarchicalMergeVCFs
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/HierarchicallyMergeVcfs
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/InputPhasedPanelEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGECasePerChromosome
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPanelWithPreprocessing
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSEBatchedCase
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSEBatchedCasePerChromosome
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/KAGEPlusGLIMPSECase
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/LeaveOneOutEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/LeaveOutEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/MergePerChrBcftools
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PanGenieCase
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PanGeniePanelCreation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluationFromHiPhase
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhasedPanelEvaluationWithoutFixVariantCollisionsForPanel
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalAndStatisticalPhasing
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasing
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasingShortTRGT
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasingTRGT
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/PhysicalPhasing_Subset
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/SplitCohortVcf
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/TRGTMerge
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/VcfdistAndOverlapMetricsEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/VcfdistEvaluation
https://dockstore.org/workflows/github.com/broadinstitute/lrma-aou1-panel-creation/hybridphasing
https://dockstore.org/workflows/github.com/broadinstitute/malaria/AmpSeq
https://dockstore.org/workflows/github.com/broadinstitute/malaria/MHap
https://dockstore.org/workflows/github.com/broadinstitute/mcl_imput/Imputation
https://dockstore.org/workflows/github.com/broadinstitute/mcl_imput/ImputationBeagle
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/AzDatasetToGcp
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CopyDataset
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CopyGcpToGcp
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/CreateWorkspaceFileManifest
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/DeleteBadStateFilesFromDataset
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/DeleteTdrRows
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ExportDataFromDatasetToOutputBucket
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ExportDataFromSnapshotToOutputBucket
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GenerateTdrSchemaJson
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GetAndDeleteOrphanedFilesFromDataset
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/GetGcpFileMd5
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/HardCloneWithExternalBucket
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/HardCloneWorkspace
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ReUploadGcpObjectWithMd5
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ReheaderBam
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/ReheaderCram
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/RenameAndReingestFiles
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/RenameColumnsAndFilesInDataset
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/SetUpStagingWorkspaceAndDataset
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TdrSummaryStatistics
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TerraSummaryStatistics
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/TerraWorkspaceTableToTDRIngest
https://dockstore.org/workflows/github.com/broadinstitute/ops-terra-utils/UploadMetricsAndGcpFilesToTerra
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Admixture
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/AggregatePRSResults
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BGEEstimateSex
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Bambu
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkAndCompareVCFs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkSVs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkVCFs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkVCFsWithoutMatch
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CKDRiskAdjustment
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CNVCallingAndMergeForFabric
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetrics
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetricsCohort
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectBGEImputationMetricsCohortScattered
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CollectMetrics
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CompareBenchmarks
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CompareSamplesWithoutTruth
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CreateIGVSession
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/CrosscheckFingerprints
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Cupcake
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DebugGlimpseCalling
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DownsampleAndCollectCoverage
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/DuplexSequencingGenerateTruth
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/EMSeq
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/EndToEndPipeline
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesAndBenchmark
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesAndSimpleBenchmark_beta
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FindSamplesToCompare
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Flair
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Flames
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FullImputationPRSValidation
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/FunctionalEquivalence
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GenerateDuplexConsensusBams
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GetCramHeader
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse1Imputation
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2CheckQC
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2Imputation
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationAndCheckQC
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationInBatches
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2ImputationQC
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2MergeBatches
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Glimpse2SplitReference
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseCheckpointTest
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseConcordance
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/GlimpseReferencePanelDev
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ImputationWorkflow
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoQuant
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoSeq
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/IsoformDiscoveryBenchmark
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ListMaleAndFemaleSamples
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MergeSingleSampleMinimacVcfs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationBenchmark
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationBenchmarkReference
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationSupplementary
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MethylationSupplementarySet
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MicrobialRNATagSeq
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/MultiProjectOntoPCs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PCARE
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PCAREAndQC
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRSQC
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRSWrapper
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PRScoringWorkflow
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PerformPopulationPCA
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PopulationPCAFromImputedCohort
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/PrepareWGSForValidation
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ProGRESSMultivariateRiskModel
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ProjectOntoPCs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/QcSVs
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAAoUMetrics
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAMetrics
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/RNAWithUMIsPipeline
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ReduceAndMergeForGlimpse
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ReduceAndMergeForGlimpseByInterval
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/SampleSetPRSWrapper
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/SimpleBenchmark
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/StringTie
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/Talon
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/TrainAncestryAdjustmentModel
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ValidateImputation
https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/ValidateScoring
https://dockstore.org/workflows/github.com/broadinstitute/pangenome-pipelines/MinigraphWGA
https://dockstore.org/workflows/github.com/broadinstitute/pangenome-pipelines/Minimap2RefIndex
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https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverage
https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverageFemale
https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubsetCoverageMale
https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/SubtractBedFiles
https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/UnionBedFiles
https://dockstore.org/workflows/github.com/masri2019/hpp_production_workflows/VariantCalling
https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Gene_Diff_Exp
https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Generate_Input_Files
https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/Prepare_Count_Files
https://dockstore.org/workflows/github.com/matthewse19/cSplotch-workflow/runcSplotch
https://dockstore.org/workflows/github.com/mattions/demo-workflows
https://dockstore.org/workflows/github.com/maurya-anand/wdl-qc
https://dockstore.org/workflows/github.com/mawumag/warp/AnnoCohort
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https://dockstore.org/workflows/github.com/mawumag/warp/GvcfToCohortVcf
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https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/asmgene
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https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfaseWorkflow
https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_base_qv_evaluation
https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_base_qv_trio_evaluation
https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/gfase_sv_evaluation
https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/kmc3
https://dockstore.org/workflows/github.com/meredith705/gfase_wdl/yak_dipcall_whatshap_asmgene
https://dockstore.org/workflows/github.com/meredith705/ont_methylation/PMDVhaplotag
https://dockstore.org/workflows/github.com/meredith705/ont_methylation/methylTaggedReadsMinimap2
https://dockstore.org/workflows/github.com/meredith705/ont_methylation/methylationONT
https://dockstore.org/workflows/github.com/meredith705/ont_methylation/modbam2bedPhased
https://dockstore.org/workflows/github.com/meredith705/wambam/wambam
https://dockstore.org/workflows/github.com/meredith705/wdl-workflows/ChimeraStats
https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/flye
https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/happyEval
https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/quastOutput
https://dockstore.org/workflows/github.com/meredith705/wdl_workflows/seqkitStats
https://dockstore.org/workflows/github.com/metoru/learing
https://dockstore.org/workflows/github.com/metoru/learing/_wdl_checker
https://dockstore.org/workflows/github.com/mewhitebroad/mars/JointGenotypingMars
https://dockstore.org/workflows/github.com/mewhitebroad/mars/JointVcfFilteringMars
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/AlamutBatchWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/AncestryAdjustment
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainAlamutWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainAnnotationsWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainMergeFASTExportsWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainPGxRiskWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainPipelinesWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainSampleLoadingWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BahrainSamplePrepWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BamsurgeonWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BgwgsPanelWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BgwgsWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRAlamutWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRFASTParsingWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRMergeFASTExportsWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRSampleLoadingWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankRoRSamplePrepWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankScrub
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankScrubWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/BiobankShardingWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/CTBHaplotypeCallerGvcf
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/CopySampleFilesWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DepthOfCoverageWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DownloadOutputsSetWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/DownloadOutputsWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/E2ETestWorkflowOne
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/E2ETestWorkflowSet
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/EtcTemp
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/Glimpse2Imputation
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/Glimpse2SplitReference
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/JointCalling
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/LmmgapWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/MergeCrams
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PGxWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSAdjustmentWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMakeAdjustmentModel
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMixModelWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSMixScoreWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSOrchestrationWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPCAWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPerformPopulationPCA
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSPreparePrsMixInputs
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSRawScoreWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSRunPRS
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSScoreQueryVcf
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSScoreVcfWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PRSSummaryWorkflow
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/PerformPCA
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/ReblockGVCFandPush
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/RiskAllelesWorkflow
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https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowOne
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https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/UnitTestWorkflowSingleSample
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/VEP_development
https://dockstore.org/workflows/github.com/mgbpm/biofx-workflows/insiMWorkflow
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https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_Call_U2AF1
https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_ExtractPass
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https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_PoN
https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-mutect2-chip/KCCGMutect2CHIP_SpliceAI
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https://dockstore.org/workflows/github.com/mgeaghan-garvan/cromwell-kccg-spliceai/KCCGSpliceAI
https://dockstore.org/workflows/github.com/mgeaghan-garvan/mocha-wgs/MochaWgsPreprocess
https://dockstore.org/workflows/github.com/mgeaghan-garvan/warp/WholeGenomeFromFastq
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https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/Dipcall
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https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/MerylNonTrio
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https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/filterVCFDups
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/getMapQTable
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/hapDotPy
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https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/pepperMarginDeepVariant
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygous
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousFaster
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousFaster2
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/phasingHomozygousV4
https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/snvInDelAssembly
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https://dockstore.org/workflows/github.com/miramastoras/hpp_production_workflows/yakNonTrio
https://dockstore.org/workflows/github.com/mkim55/deepvar-wdl/deepvariant
https://dockstore.org/workflows/github.com/mobinasri/flagger/Asm2AsmAligner
https://dockstore.org/workflows/github.com/mobinasri/flagger/BamCoverage
https://dockstore.org/workflows/github.com/mobinasri/flagger/DeepVariantScattered
https://dockstore.org/workflows/github.com/mobinasri/flagger/Flagger
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEnd
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndNoVariantCalling
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndNoVariantCallingNoRef
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerEndToEndWithMapping
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerPreprocess
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerPreprocessNoVariantCalling
https://dockstore.org/workflows/github.com/mobinasri/flagger/FlaggerStats
https://dockstore.org/workflows/github.com/mobinasri/flagger/HMM-Flagger
https://dockstore.org/workflows/github.com/mobinasri/flagger/HMMFlaggerEndToEnd
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https://dockstore.org/workflows/github.com/mobinasri/flagger/LongReadAlignerSecphase
https://dockstore.org/workflows/github.com/mobinasri/flagger/ProjectBlocks
https://dockstore.org/workflows/github.com/mobinasri/flagger/ProjectBlocksForFlagger
https://dockstore.org/workflows/github.com/mobinasri/flagger/SubsetAlignment
https://dockstore.org/workflows/github.com/mobinasri/flagger/UnionBedFiles
https://dockstore.org/workflows/github.com/mobinasri/flagger/mergeCoverage
https://dockstore.org/workflows/github.com/mobinasri/secphase/CorrectBam
https://dockstore.org/workflows/github.com/mobinasri/secphase/Secphase
https://dockstore.org/workflows/github.com/mr-eyes/genome-grist-CWL
https://dockstore.org/workflows/github.com/mruffalo/cellranger-pipeline
https://dockstore.org/workflows/github.com/mruffalo/chromvar-cwl/chromvar
https://dockstore.org/workflows/github.com/mvdbeek/bioinformatics-workflows/salmon-proof-of-concept-galaxy
https://dockstore.org/workflows/github.com/nanoporegenomics/hpp_production_workflows/YakAsmStatsNoTrio
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/bcftools
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/bedtoolsMapwf
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https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/hapdiffWorkflow
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/jasmine
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https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/minimapWorkflow
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/modbamtools
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/modkit
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/pepperMarginDvWorkflow
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https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/regionalMethylationwf
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/shasta
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/shastaHapdup
https://dockstore.org/workflows/github.com/nanoporegenomics/napu_wf/snifflesWorkflow
https://dockstore.org/workflows/github.com/nanoporegenomics/wambam/wambam
https://dockstore.org/workflows/github.com/ncsa/phyloflow/phyloflow_standalone
https://dockstore.org/workflows/github.com/neranjan007/GAS_identification/gas_identification_wf2
https://dockstore.org/workflows/github.com/neranjan007/GBS_Identification_and_Typing/BLAST_virulence
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https://dockstore.org/workflows/github.com/neurogenomics/WDLtest/WDLtest
https://dockstore.org/workflows/github.com/neurogenomics/wdl-scflow
https://dockstore.org/workflows/github.com/nextflow-io/rnaseq-nf
https://dockstore.org/workflows/github.com/nextstrain/ncov
https://dockstore.org/workflows/github.com/nextstrain/ncov/genbank_ingest
https://dockstore.org/workflows/github.com/nextstrain/ncov/gisaid_ingest
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https://dockstore.org/workflows/github.com/nextstrain/wdl-debug
https://dockstore.org/workflows/github.com/nf-core/airrflow
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https://dockstore.org/workflows/github.com/vkt1414/CloudSegmentator/perFrameFunctionalGroupSequenceExtractionOnTerra
https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed/mhubaiDockerfileWorkflow
https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed/mhubai_totalseg
https://dockstore.org/workflows/github.com/vkt1414/mhubai-unleashed2/mhubaiDockerfileWorkflow
https://dockstore.org/workflows/github.com/vrockai/dockstore-whalesay
https://dockstore.org/workflows/github.com/vruano/warp/WholeGenomeGermlineSingleSample
https://dockstore.org/workflows/github.com/waldronlab/TCGA-workflows
https://dockstore.org/workflows/github.com/welch-lab/steamer
https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-ATACseq
https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-RNAseq
https://dockstore.org/workflows/github.com/welch-lab/steamer/STEAMER-mCseq
https://dockstore.org/workflows/github.com/williamrowell/wdl-mock-workflow
https://dockstore.org/workflows/github.com/wnojopra/gatk/GvsJointVariantCalling
https://dockstore.org/workflows/github.com/workflow-development-interest-group/bio-cwl-tools/prefetch_fastq
https://dockstore.org/workflows/github.com/wshands/hmmer-docker
https://dockstore.org/workflows/github.com/wshands/simple_cwl_workflow
https://dockstore.org/workflows/github.com/wshands/test-workflows-and-tools
https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/detect_variants_wgs
https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/immuno
https://dockstore.org/workflows/github.com/wustl-oncology/analysis-wdls/somatic_wgs
https://dockstore.org/workflows/github.com/xbrianh/xscanpy/cbScanpyHCA
https://dockstore.org/workflows/github.com/xingjiepan/feb_9_practice/WDL-101-BAM
https://dockstore.org/workflows/github.com/xzhuo/methylation/remora
https://dockstore.org/workflows/github.com/yfarjoun/warp/JointGenotyping
https://dockstore.org/workflows/github.com/yfarjoun/warp/UltimaGenomicsWholeGenomeGermline
https://dockstore.org/workflows/github.com/yubocheng/Rcollectlworkflowh5ad
https://dockstore.org/workflows/github.com/yubocheng/Rcollectlworkflowh5ad/workflow_h5ad_DelayedArray_parameters
https://dockstore.org/workflows/github.com/yubocheng/performancesummary
https://dockstore.org/workflows/github.com/yuliamostovoy/card_workflows/evaluateSVsWithTTMars
https://dockstore.org/workflows/github.com/zhengxinchang/terra-kanpig/kanpig-terra
https://dockstore.org/workflows/github.com/zhengxinchang/terra_pgrtk_wdl/PGRTK-cloud
https://dockstore.org/workflows/github.com/zweber-compbio/Mutect2_Workflows
https://dockstore.org/workflows/gitlab.com/wangbin2/gatk/cnv_somatic_pair_workflow_copy